PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g080860.1.1 | ||||||||
Common Name | LOC101255761 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | G2-like | ||||||||
Protein Properties | Length: 254aa MW: 28345.9 Da PI: 6.8886 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.5 | 3e-33 | 43 | 96 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWt++LH++Fv+ave+LGG+++AtPk +l+lm+vkgLt++hvkSHLQ+YR+ Solyc02g080860.1.1 43 PRLRWTHDLHRCFVHAVERLGGEDRATPKMVLQLMDVKGLTISHVKSHLQMYRS 96 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.755 | 39 | 99 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-32 | 39 | 98 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.85E-16 | 41 | 97 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.9E-25 | 43 | 97 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.7E-7 | 44 | 95 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MMNELHPFSD NSPSNLSMKQ PIMLENTNNN KSGVRPYVRS KMPRLRWTHD LHRCFVHAVE 60 RLGGEDRATP KMVLQLMDVK GLTISHVKSH LQMYRSMKHE QLMQAVAEAA NGSKSNKMDG 120 PDQVHYPHGN FLHHYYNGHP NSTITSTYSD HIASTPAFIP PAPWRPMPKK MMGLEGRLDP 180 ACNMFRDFFN GCTTVQDGSV GDQYGSSLSN KHFSIIDTEE EAEDSGSITM FAQPSAGLED 240 VNNNNISLDL TLG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-18 | 44 | 99 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-18 | 44 | 99 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-18 | 44 | 99 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-18 | 44 | 99 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-18 | 44 | 99 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-18 | 44 | 99 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-18 | 44 | 99 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-18 | 44 | 99 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-18 | 44 | 99 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-18 | 44 | 99 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-18 | 44 | 99 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-18 | 44 | 99 | 4 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g080860.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004233787.1 | 0.0 | myb family transcription factor EFM-like isoform X1 | ||||
TrEMBL | A0A3Q7F7B8 | 1e-120 | A0A3Q7F7B8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g080860.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7450 | 20 | 29 | Representative plant | OGRP285 | 15 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 3e-34 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g080860.1.1 |
Entrez Gene | 101255761 |
Publications ? help Back to Top | |||
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