PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Solyc02g080740.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 278aa MW: 31985.5 Da PI: 10.2615 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 94.5 | 8.2e-30 | 40 | 92 | 2 | 54 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 prlrWt++LH rFv +ve+LGG ++AtPk++l++m+vkgLt++h+kSHLQ+Y+ Solyc02g080740.1.1 40 PRLRWTHDLHCRFVYVVERLGGVDRATPKRVLQIMDVKGLTISHIKSHLQMYK 92 8***************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-28 | 36 | 95 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.63E-14 | 39 | 93 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.9E-22 | 40 | 93 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 278 aa Download sequence Send to blast |
MMKGLEFSEN SPSLSMELEY RSNDKSSEFA IRTYVKSTMP RLRWTHDLHC RFVYVVERLG 60 GVDRATPKRV LQIMDVKGLT ISHIKSHLQM YKNMKHQEMQ AEAANGKKRN RIDGSDSMNI 120 PQRNLVRRHN HIKGKAAMFD GSDRMNFPQR NLVHRYNHIK SKAAMFDGSD QMNFSQGNLV 180 HCYNHNNGKA PIFNGSDEMN FPQGNLVHRY NHNNGKSVFD GYLNPTVTTN YLDKIPSSST 240 AFPPPWFVSF FFSFFFLLKM GTILSVNTFY IINVVIT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-16 | 41 | 97 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-16 | 41 | 97 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-16 | 41 | 97 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-16 | 41 | 97 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-16 | 41 | 97 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-16 | 41 | 97 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-16 | 41 | 97 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-16 | 41 | 97 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Solyc02g080740.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC215407 | 1e-167 | Solanum lycopersicum chromosome 2 clone C02HBa0167J21, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027770015.1 | 1e-143 | two-component response regulator ORR24-like | ||||
TrEMBL | A0A3Q7F5V8 | 1e-171 | A0A3Q7F5V8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g080740.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13843 | 4 | 12 | Representative plant | OGRP285 | 15 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G42660.1 | 1e-26 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Solyc02g080740.1.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|