PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g080720.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 327aa MW: 37378.4 Da PI: 10.0987

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g080720.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	92.7	3e-29	40	92	2	54
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 prlrWt+++H+rFv ave+ GG ++AtPk +l++m+vkgLt++h+kSHLQ+Y+ Solyc02g080720.1.1 40 PRLRWTHDIHRRFVYAVERVGGVDRATPKMVLQIMDVKGLTISHIKSHLQMYK 92 8***************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-27	38	95	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.5E-21	40	93	IPR006447	Myb domain, plants
SuperFamily	SSF46689	2.69E-13	40	93	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MMKGLEFSKN SPSLSMELGY SSNYKSSKFA IRAYIKSIMP RLRWTHDIHR RFVYAVERVG 60 GVDRATPKMV LQIMDVKGLT ISHIKSHLQM YKNMKHQEMQ GEAANGRKRN RIDGSDSMNI 120 PQRNLVRRHN HIKGKTAMFD GSDSINFPQR NLVDRYNHIK SKAAMFDGSD QMNFPQGNLV 180 HCYNHNNGKA PIFKGSDQMN FTQRNLVHRY NYNNGKSVFD DHLNPTVTTN YLDKIASSST 240 AFPPPWKSMP EKKMGLERRY YLFRDFFDGT ITIRDGDNDD KIVRAYGISN LPNKSATSMV 300 EEEDSHSTIS LDLSLSSYIS LDLTLG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-16	41	97	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-16	41	97	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	9e-16	41	96	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-16	41	96	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-16	41	96	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-16	41	96	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-16	41	97	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-16	41	97	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-16	41	97	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-16	41	97	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-16	41	97	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-16	41	97	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g080720.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215407	1e-135	Solanum lycopersicum chromosome 2 clone C02HBa0167J21, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027770015.1	0.0	two-component response regulator ORR24-like
TrEMBL	K4B9U3	0.0	K4B9U3_SOLLC; Uncharacterized protein
STRING	Solyc02g080720.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13843	4	12
Representative plant	OGRP285	15	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42660.1	6e-27	G2-like family protein

Link Out ? help Back to Top
Phytozome	Solyc02g080720.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]