PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g080710.1.1

Common Name

LOC104645796

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 360aa MW: 40617 Da PI: 8.9659

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g080710.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	35.4	2.4e-11	40	64	2	26
G2-like 2 prlrWtpeLHerFveaveqLGGsek 26 prlrWt++LH+rFv av++LGG+++ Solyc02g080710.1.1 40 PRLRWTHDLHRRFVYAVDHLGGIDR 64 8*********************987 PP
2	G2-like	94.8	6.9e-30	100	153	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrW +LH+rFv av++LGG ++AtPk +l++m+vkgLt++h+kSHLQ+YR+ Solyc02g080710.1.1 100 PRLRWIDDLHRRFVYAVDHLGGVNRATPKMVLQIMDVKGLTVSHIKSHLQMYRS 153 8****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.0E-9	36	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.094	96	156	IPR017930	Myb domain
SuperFamily	SSF46689	4.84E-13	98	154	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.6E-27	98	154	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.6E-22	100	153	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MKKGLEFSEN SPSLSMELGY RSNDKSSEFS IRAYVKSTMP RLRWTHDLHR RFVYAVDHLG 60 GIDRLEFSED SPSLSMELGN NSSDKTSKFA IRAYVKPRIP RLRWIDDLHR RFVYAVDHLG 120 GVNRATPKMV LQIMDVKGLT VSHIKSHLQM YRSLKHQEMQ ALAANGRKRN RIDCSDSMNI 180 PRGNLVHRYN HINGKAAVID GSDQMNFPQG NLVNGYNHIK GKAAMFDGSD QMNFPQGNLV 240 HCYNHNNGKS VFDGHLNPTV TTNYLDKIAS SSTVFPPPWI PMPEKKMGLE GRCYIFRDFF 300 DGTITIRNGE DDNKIVRAYG ISNLPNESAT SMIEEENSHS TMSLELSLSS DISLDLTLG*

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MKKGLEFSEN SPSLSMELGY RSNDKSSEFS IRAYVKSTMP RLRWTHDLHR RFVYAVDHLG  60
GIDRLEFSED SPSLSMELGN NSSDKTSKFA IRAYVKPRIP RLRWIDDLHR RFVYAVDHLG  120
GVNRATPKMV LQIMDVKGLT VSHIKSHLQM YRSLKHQEMQ ALAANGRKRN RIDCSDSMNI  180
PRGNLVHRYN HINGKAAVID GSDQMNFPQG NLVNGYNHIK GKAAMFDGSD QMNFPQGNLV  240
HCYNHNNGKS VFDGHLNPTV TTNYLDKIAS SSTVFPPPWI PMPEKKMGLE GRCYIFRDFF  300
DGTITIRNGE DDNKIVRAYG ISNLPNESAT SMIEEENSHS TMSLELSLSS DISLDLTLG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-16	101	157	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-16	101	157	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-16	101	156	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-16	101	156	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-16	101	156	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-16	101	156	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-16	101	157	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-16	101	157	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-16	101	157	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-16	101	157	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-16	101	157	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-16	101	157	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g080710.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215407	1e-119	Solanum lycopersicum chromosome 2 clone C02HBa0167J21, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010316586.1	0.0	uncharacterized protein LOC104645796
TrEMBL	A0A3Q7F799	0.0	A0A3Q7F799_SOLLC; Uncharacterized protein
STRING	Solyc02g080710.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13843	4	12
Representative plant	OGRP285	15	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	4e-26	G2-like family protein

Link Out ? help Back to Top
Phytozome	Solyc02g080710.1.1
Entrez Gene	104645796

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]