PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g080680.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | G2-like | ||||||||
Protein Properties | Length: 230aa MW: 25774.2 Da PI: 9.1953 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 34.4 | 5e-11 | 2 | 25 | 32 | 55 |
G2-like 32 ilelmkvkgLtlehvkSHLQkYRl 55 +l++m+vkg+t++h+kSHLQ+YR+ Solyc02g080680.1.1 2 VLQIMNVKGVTISHIKSHLQMYRS 25 89*********************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.4E-10 | 2 | 26 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MVLQIMNVKG VTISHIKSHL QMYRSLKHQE MQAEAANGRK RNRIDGADSM NNPRANLVHC 60 YNHINGKAAV VDGSDQMNFP QGNLVNGYNH IKGKATMFDG SDQMNFPQGN LVHCYNHNNG 120 KAPIFNGSNQ MNFPQGNLVH CYNHNNGKAP IFNGSNQMNF PQENLVHRYN HNNGKSVFDG 180 HLNPTVTTNY LEKIASSSTV FPPPWMEMMI IKSCEHMVLA VCQIRVQLQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g080680.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215407 | 0.0 | Solanum lycopersicum chromosome 2 clone C02HBa0167J21, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027770015.1 | 1e-101 | two-component response regulator ORR24-like | ||||
TrEMBL | A0A3Q7F5U9 | 1e-147 | A0A3Q7F5U9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g080680.1.1 | 1e-170 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA26863 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42660.1 | 5e-09 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g080680.1.1 |
Publications ? help Back to Top | |||
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