PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g079180.1.1

Common Name

LOC104645813

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HSF

Protein Properties

Length: 415aa MW: 47140.7 Da PI: 4.6757

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g079180.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	97.8	1.1e-30	93	185	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 F+ k+ye+l d ++k+lisws+ng+sf+++d+++fa +vLp++F+h+n++SFv QLn YgFkkv+ ++ eF+h+ F++gk + Solyc02g079180.1.1 93 FVLKIYEMLADIQFKSLISWSNNGTSFIIHDNHKFAVDVLPRFFRHNNISSFVCQLNSYGFKKVSWDK---------FEFRHDCFQRGKGQ 174 9***************************************************************99.........67******** PP XXXXXXXXXXX CS HSF_DNA-bind 93 llekikrkkse 103 l++ikrk s+ Solyc02g079180.1.1 175 WLRNIKRKISK 185 *****9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	6.5E-38	89	182	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.3E-30	90	182	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	2.72E-28	91	182	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	6.7E-27	93	182	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.1E-13	93	116	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.1E-13	131	143	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.1E-13	144	156	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
METEGGKGKG KMTEIDDIVE ALGESYEGLE DVHIDISMLE YGDDNDDDNQ CDNRSNEVNH 60 GNAAAVAATP TTPRELFSSS SNRRNFQRRA SPFVLKIYEM LADIQFKSLI SWSNNGTSFI 120 IHDNHKFAVD VLPRFFRHNN ISSFVCQLNS YGFKKVSWDK FEFRHDCFQR GKGQWLRNIK 180 RKISKSQMNE QSTERQAIDE TVAFTMEKEI EEIRAEQVTM REEIMMLQRQ LDVLEKEMED 240 INQAGSNMSS KKAKICMILF NSLFACTRGI DSTEVAEEQG GEVEDGVENS GKGNRGKKRK 300 MLVVEELEGV NEGRKKGNPG KERKMQVIEE LEGDNEGRKK IADAADFKTG SYLGRMLMDE 360 MNLNNLDQEQ PDNFLESEEL AGSSTFWTDY VEKMDHKAIR GVDPALSQSQ EIPL*

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

METEGGKGKG KMTEIDDIVE ALGESYEGLE DVHIDISMLE YGDDNDDDNQ CDNRSNEVNH  60
GNAAAVAATP TTPRELFSSS SNRRNFQRRA SPFVLKIYEM LADIQFKSLI SWSNNGTSFI  120
IHDNHKFAVD VLPRFFRHNN ISSFVCQLNS YGFKKVSWDK FEFRHDCFQR GKGQWLRNIK  180
RKISKSQMNE QSTERQAIDE TVAFTMEKEI EEIRAEQVTM REEIMMLQRQ LDVLEKEMED  240
INQAGSNMSS KKAKICMILF NSLFACTRGI DSTEVAEEQG GEVEDGVENS GKGNRGKKRK  300
MLVVEELEGV NEGRKKGNPG KERKMQVIEE LEGDNEGRKK IADAADFKTG SYLGRMLMDE  360
MNLNNLDQEQ PDNFLESEEL AGSSTFWTDY VEKMDHKAIR GVDPALSQSQ EIPL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-23	93	184	29	131	Heat shock factor protein 1
5d5v_B	2e-23	93	184	29	131	Heat shock factor protein 1
5d5v_D	2e-23	93	184	29	131	Heat shock factor protein 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g079180.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215365	0.0	Solanum lycopersicum chromosome 2 clone C02HBa0031A21, complete sequence
GenBank	AC215402	0.0	Solanum lycopersicum chromosome 2 clone C02HBa0161P02, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010316675.1	0.0	heat stress transcription factor A-1b-like isoform X1
TrEMBL	K4B9E2	0.0	K4B9E2_SOLLC; Uncharacterized protein
STRING	Solyc02g079180.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14099	12	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03720.1	2e-29	heat shock transcription factor A3

Link Out ? help Back to Top
Phytozome	Solyc02g079180.1.1
Entrez Gene	104645813

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]