PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g078340.2.1

Common Name

LOC101246888

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HSF

Protein Properties

Length: 206aa MW: 24239.7 Da PI: 9.8251

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g078340.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	104.1	1.2e-32	26	123	2	102
HHHHHHHHHC......TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS HSF_DNA-bind 2 Flkklyeile......deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 Fl+k+y++le ++++ +++sw+ +gn fvv+ ++ef++ +LpkyFkh+nf+SF+RQLn+YgFkkv +++ weF+h +F Solyc02g078340.2.1 26 FLSKTYDLLEeqeeenSNRNIKVVSWNGEGNGFVVWCPDEFSEVMLPKYFKHNNFSSFIRQLNTYGFKKVASKR---------WEFHHGKF 107 9*******5554433366789********************************************999.........**** PP XXXXXXXXXXXXXXXX CS HSF_DNA-bind 87 kkgkkellekikrkks 102 +kg ++ll +i rkk Solyc02g078340.2.1 108 QKGCRHLLAEITRKKC 123 ***********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.4E-34	18	115	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.3E-39	22	121	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	3.26E-27	23	121	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.6E-29	26	121	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	71	95	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MATDDNRNIH RKIGRSTTRT KCPAPFLSKT YDLLEEQEEE NSNRNIKVVS WNGEGNGFVV 60 WCPDEFSEVM LPKYFKHNNF SSFIRQLNTY GFKKVASKRW EFHHGKFQKG CRHLLAEITR 120 KKCEPSVFPT YLNPSKKSTL LLATNNNDQE NTITRQHLME ENQNLKKERM ELQMQIAHFK 180 TLEMKLLQCL SQCVENPHNK TRRLF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hdk_A	7e-16	22	121	7	110	Heat shock factor protein 2
5hdk_B	7e-16	22	121	7	110	Heat shock factor protein 2
5hdk_C	7e-16	22	121	7	110	Heat shock factor protein 2
5hdk_D	7e-16	22	121	7	110	Heat shock factor protein 2
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g078340.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC226513	0.0	Solanum lycopersicum chromosome 2 clone C02SLe0005F12, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004232865.1	1e-153	heat stress transcription factor B-2a-like
TrEMBL	M1CWQ4	1e-128	M1CWQ4_SOLTU; Uncharacterized protein
STRING	Solyc02g078340.2.1	1e-153	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10707	18	23
Representative plant	OGRP96	17	233

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62020.1	2e-38	heat shock transcription factor B2A

Link Out ? help Back to Top
Phytozome	Solyc02g078340.2.1
Entrez Gene	101246888

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]