PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g072000.2.1
Common NameLOC101249882
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 409aa    MW: 46168.6 Da    PI: 5.0924
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g072000.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.84.6e-35141062102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX.XXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks.Fkkgkk 91 
                         F+ k+ye+++d++ + ++sws+n++sf+v+++ +fa+++Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++  F +g+ 
  Solyc02g072000.2.1  14 FIAKTYEMVDDPSCDAIVSWSSNNKSFIVWNPPDFARDLLPRYFKHNNFSSFIRQLNTYGFRKIDPEK---------WEFANEGnFIRGQP 95 
                         9****************************************************************999.........*****988****** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  92 ellekikrkks 102
                         +ll++i+r+k 
  Solyc02g072000.2.1  96 NLLKNIHRRKP 106
                         ********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467856.12E-3510104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.3E-6010104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.5E-3711104IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.9E-3114104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MDEASCSTNA LPPFIAKTYE MVDDPSCDAI VSWSSNNKSF IVWNPPDFAR DLLPRYFKHN  60
NFSSFIRQLN TYGFRKIDPE KWEFANEGNF IRGQPNLLKN IHRRKPVHSH SAQNLHGLSS  120
PLTESERQGY KEDIQKLMHE NGSLHLDLQR HKQDHQGLEL QMQVLTERVQ HAEHRQKTMI  180
SALAQTLDRP VMDLSHMPQL QVNDRKRRFP GNSCLYNESD LEDMRGISSR ALSRENMNPS  240
SLLTMNAELL DQLESSLTFW EDVLQDVDQA GMRPNCLLQL DESTSCADSP AISYTQLNID  300
VGPKASGIDM NSEPNANIMP EVAEPEDKAA VAGTSTNVPT GVNDLFWEQF LTENPGSVDA  360
PEVQSERKDI GSKKNESKPV DSGKYWWNMK SVNSLAEQMG HLTPAEKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-221110426129Heat shock factor protein 1
5d5v_B2e-221110426129Heat shock factor protein 1
5d5v_D2e-221110426129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.138440.0fruit| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g072000.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2265210.0Solanum lycopersicum chromosome 2 clone C02SLm0096H01, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233050.10.0heat stress transcription factor A-4c
RefseqXP_010316855.10.0heat stress transcription factor A-4c
RefseqXP_025885141.10.0heat stress transcription factor A-4c
TrEMBLA0A3Q7F4M90.0A0A3Q7F4M9_SOLLC; Uncharacterized protein
STRINGSolyc02g072000.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34482344
Representative plantOGRP52351020
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-111heat shock transcription factor A4A
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]