PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g071130.2.1
Common NameLOC101264783
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 318aa    MW: 36338.4 Da    PI: 7.0336
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g071130.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.21.7e-33168225259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vk+s++prsYYrCts++C+vkk+vers +dp++v++tYeg+Hnh+
  Solyc02g071130.2.1 168 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCQVKKRVERSYQDPSIVITTYEGQHNHH 225
                         8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-35153227IPR003657WRKY domain
SuperFamilySSF1182901.27E-29159227IPR003657WRKY domain
PROSITE profilePS5081132.42162227IPR003657WRKY domain
SMARTSM007745.9E-39167226IPR003657WRKY domain
PfamPF031065.0E-26168225IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGDELRDLYY HQPFQEDIKH DSSMVQNIHM LDPTFMSYTS EYLHGSSSDY ITNNSLGKPF  60
GFSTLSSLKD DDIMKQDHVD ANVNYINNNN DVVGGSETPV TPNSSISNSS SNGDHEDSNK  120
KDKQVKDETL EDGEDASKKE SKAKKKGEKK QRPPKFAFMT KSEVDHLEDG YRWRKYGQKA  180
VKNSPYPRSY YRCTSQKCQV KKRVERSYQD PSIVITTYEG QHNHHLPATL RGSVARMLNP  240
SMLAQPSPLM APQASFHQEF IMSQMPQFYG HANVFANSSM YHQNLNHHQQ MQLPHPHHDY  300
GLLQDMVPSM FNLKQEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-281602281078Probable WRKY transcription factor 4
2lex_A4e-281602281078Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g071130.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233015.10.0WRKY transcription factor 71-like
TrEMBLM1AL070.0M1AL07_SOLTU; Uncharacterized protein
STRINGSolyc02g071130.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.12e-54WRKY DNA-binding protein 71
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]