PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g062060.1.1
Common NameLOC101254272
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 207aa    MW: 23932.1 Da    PI: 6.9033
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g062060.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM39.41.9e-12611410128
                 NAM  10 tdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkevlskkg 97 
                         +de+l+  yL + v+g ++ + + i++v++y+  +P++L  +  +++++ y F++ +kk   gk  nr    + g W+a g +++v++k++
  Solyc02g062060.1.1   6 EDEQLI-GYLINFVTGMPVGC-DEIRTVELYSNkKPSQLFDT--TTTDHHYVFTELKKK---GKYFNRgiGGRGGSWRAYGASEDVVDKNR 89 
                         599999.9**********999.77****9997659****633..234577999988776...5677774234599**************** PP

                 NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                         +++g k+ + f   ++    +  W+m+ey l
  Solyc02g062060.1.1  90 SVIGFKRRFRFD--EE----NHIWIMKEYCL 114
                         ***********7..22....458******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.9251141IPR003441NAC domain
PfamPF023652.2E-66114IPR003441NAC domain
SuperFamilySSF1019413.14E-157141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MGTNIEDEQL IGYLINFVTG MPVGCDEIRT VELYSNKKPS QLFDTTTTDH HYVFTELKKK  60
GKYFNRGIGG RGGSWRAYGA SEDVVDKNRS VIGFKRRFRF DEENHIWIMK EYCLFDSKLK  120
DLRLRGQIRH EGFVVCSIMR KDTCSSQCQE NQDLGLIQSD DLKESTMTAV KQDECFVRQE  180
VVDEETLRNA YTRPLLDSMF RNTPKP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g062060.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2467430.0Solanum lycopersicum strain Heinz 1706 chromosome 2 clone hba-11o22 map 2, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233985.11e-154NAC domain-containing protein 96-like
TrEMBLA0A3Q7F0A41e-153A0A3Q7F0A4_SOLLC; Uncharacterized protein
STRINGSolyc02g062060.1.11e-154(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33811041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.12e-07NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]