PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g055370.2.1 | ||||||||
Common Name | LOC101246296 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 123aa MW: 14573.5 Da PI: 4.7154 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.9 | 3.6e-13 | 14 | 89 | 5 | 90 |
-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 +k+g l +p f+ ++ + + + + +++ ++W vk+ ++++ + ++ W eFv++ +Lk+gD++vFk++g++ef Solyc02g055370.2.1 14 I--LPGFKNG-LKIPLGFL-KYlkR--HDQ-HEHAILTTDDKKWLVKV--NGRR---LEEGSWIEFVEELNLKVGDVLVFKHEGDMEF 89 5..4566666.*******9.77332..333.366777889********..7777...67899*******************9999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.3E-18 | 3 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.04E-18 | 3 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.771 | 7 | 97 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.30E-11 | 8 | 95 | No hit | No description |
SMART | SM01019 | 1.3E-12 | 10 | 97 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-9 | 18 | 89 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MEIPPKKPHF FKPILPGFKN GLKIPLGFLK YLKRHDQHEH AILTTDDKKW LVKVNGRRLE 60 EGSWIEFVEE LNLKVGDVLV FKHEGDMEFD VFKFDLSHHC DKEYAMYQEE DEDEDEEDED 120 KL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g055370.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC246812 | 1e-170 | Solanum lycopersicum strain Heinz 1706 chromosome 2 clone sle-35o15 map 2, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004231728.1 | 2e-83 | B3 domain-containing protein REM5-like | ||||
TrEMBL | A0A3Q7FIV9 | 4e-82 | A0A3Q7FIV9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g055370.2.1 | 7e-83 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 | Representative plant | OGRP2682 | 2 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 6e-15 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g055370.2.1 |
Entrez Gene | 101246296 |
Publications ? help Back to Top | |||
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