PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc02g032070.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 109aa MW: 11958.1 Da PI: 4.0335 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.4 | 8e-16 | 7 | 68 | 34 | 99 |
SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 t +l +sg++W v l +++++ ++ +GW +Fvk++ L++gD++vF++d + f v+vf++ Solyc02g032070.1.1 7 GTTVLVGPSGNVWPVDL--IQQDDGLFFNNGWVSFVKDHCLETGDSLVFRYDADLHF--IVQVFDE 68 478899***********..99999**************************9886666..9999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.676 | 1 | 69 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 8.63E-19 | 5 | 74 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.4E-13 | 6 | 68 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-17 | 6 | 71 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.83E-16 | 6 | 67 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MEGGDSGTTV LVGPSGNVWP VDLIQQDDGL FFNNGWVSFV KDHCLETGDS LVFRYDADLH 60 FIVQVFDESS CDKEASYNTD CSQEATDLYN LALKKRDRGN SVLGNEKT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.22757 | 1e-156 | callus |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 5891397 | 1e-156 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc02g032070.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU914524 | 1e-152 | S.lycopersicum DNA sequence from clone LE_HBa-107D6 on chromosome 4, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019069240.1 | 2e-63 | B3 domain-containing protein Os01g0723500-like | ||||
Refseq | XP_027772493.1 | 1e-63 | B3 domain-containing protein Os01g0723500-like isoform X2 | ||||
TrEMBL | A0A3Q7FHN5 | 3e-74 | A0A3Q7FHN5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g032070.1.1 | 5e-75 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9820 | 21 | 26 | Representative plant | OGRP7653 | 9 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34400.1 | 8e-10 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc02g032070.1.1 |
Publications ? help Back to Top | |||
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