PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g026080.1.1
Common NameLOC101253543
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 346aa    MW: 40228.4 Da    PI: 7.1526
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g026080.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.72.8e-15590192
                        EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
                        ffkv+  +  ++ +++ +p  ++ ++ +gk   +++++l+d+ g+ W +++  +k+++ ++++ GW++F ++n+++  Df++F +dg+ +f +
  Solyc02g026080.1.1  5 FFKVF--NPETSAKWIKIPIGYT-KYkNGK--IPRKVSLRDQYGNMWPIRV--TKQGKDIYFKYGWEKFIEDNNVEFADFLIFDYDGKGTFDF 90
                        78888..677777889******9.663555..6779***************..********************************99766643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.2E-18398IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.971396IPR003340B3 DNA binding domain
SuperFamilySSF1019367.26E-19598IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-13589IPR003340B3 DNA binding domain
CDDcd100172.88E-11593No hitNo description
SMARTSM010196.1E-9596IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.6E-11235332IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.37E-12235322IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.57238337IPR003340B3 DNA binding domain
SMARTSM010190.39241333IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEKGFFKVFN PETSAKWIKI PIGYTKYKNG KIPRKVSLRD QYGNMWPIRV TKQGKDIYFK  60
YGWEKFIEDN NVEFADFLIF DYDGKGTFDF KLLGMNGCVK NGSGGKNKRE EMNVEHGKSV  120
DLKEKTRGSD RSNSSFDYDS DEHYMVEEDV EIKEETHKGA SYSKCRYMEE EVDEKQEGGG  180
KEQKDEDEEE DEKVGTYTEK VQHSKVGCQK VNVCRVRDIP EHYGADIFKS GRVTQPKNPY  240
FVAKIQERIR DKLYIPMEVI RDYKLELPSR MIIRDSAGRE FETRVSKWTD GRVWLFGGWI  300
KLGRLNLVEK DDRYICELVR GNCGKALYLQ VQVLHEGSSS HPDNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A5e-152988104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g026080.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025885531.10.0B3 domain-containing protein At5g60140-like
TrEMBLA0A3Q7EY670.0A0A3Q7EY67_SOLLC; Uncharacterized protein
STRINGSolyc02g026080.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Representative plantOGRP8585614
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-20B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]