PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g108930.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 286aa    MW: 32498.2 Da    PI: 9.294
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g108930.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.64.1e-17241031499
                         T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         + l++p +f+++ +  +e++ + tl+ +sg +W+vkl  +   ++ +++kGWk+F k n+L+ g+ +vF++dg  +f  ++++f+k
  Solyc01g108930.2.1  24 NELRIPAHFLRHVS--EESPDKATLKCLSGGTWNVKL--QCDEDGLLIQKGWKKFQKNNQLENGEYLVFRYDGALQF--TIRIFSK 103
                         4599******7776..447779***************..888888**************************997777..9999987 PP
2B358.41.3e-18180272198
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                         f+k l+  +v ks+ l++p+ f e+   +g+   ++  +l++++g+ W+v++    + g + + +GWk+Fv++n+Lkeg ++vF+l++   
  Solyc01g108930.2.1 180 FVKCLKGYNVKKSCFLYVPRWFSEQLstSGN---KRAAVLRNSEGKGWKVNC--ITQNGYHAFCGGWKQFVSDNNLKEGQVCVFQLVN--A 263
                         7888988999*************98865444...4579**************..66666688999********************986..5 PP

                         E..EEEEE- CS
                  B3  90 felvvkvfr 98 
                          el+v+vf+
  Solyc01g108930.2.1 264 NELKVSVFN 272
                         556999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.5E-2011104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.50711104IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-2011105IPR015300DNA-binding pseudobarrel domain
CDDcd100178.66E-1413102No hitNo description
SMARTSM010191.6E-1214104IPR003340B3 DNA binding domain
PfamPF023625.1E-1523103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-24175272IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-23175272IPR015300DNA-binding pseudobarrel domain
CDDcd100171.22E-21178272No hitNo description
SMARTSM010191.9E-12180274IPR003340B3 DNA binding domain
PfamPF023628.1E-17180272IPR003340B3 DNA binding domain
PROSITE profilePS5086314.522180274IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MENSLLKIDK RAIFYKVFCP SITNELRIPA HFLRHVSEES PDKATLKCLS GGTWNVKLQC  60
DEDGLLIQKG WKKFQKNNQL ENGEYLVFRY DGALQFTIRI FSKNGLERQV KSTNMVENQQ  120
ASIDGGSKRK RPEKFPKKTC ANGENETEDV CCVSLEHETR RKRAALVTEE DLLTPNIPQF  180
VKCLKGYNVK KSCFLYVPRW FSEQLSTSGN KRAAVLRNSE GKGWKVNCIT QNGYHAFCGG  240
WKQFVSDNNL KEGQVCVFQL VNANELKVSV FNDPSESLLK LAAQR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g108930.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2384990.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-8l19 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089728.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A3Q7EST50.0A0A3Q7EST5_SOLLC; Uncharacterized protein
STRINGSolyc01g108930.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37792244
Representative plantOGRP1159047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-22B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]