PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g108130.2.1 | ||||||||
Common Name | LOC101264981 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 337aa MW: 38579.1 Da PI: 9.73 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.8 | 3e-16 | 127 | 216 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f k ++ps+v +l lpk+f++ h + +++t++l de+g++++ + ++++ l++GW++F +++L gD ++F+l++ + Solyc01g108130.2.1 127 FAKCMLPSNVAHGFWLHLPKSFCNMHL--PSSDTTVILVDEWGNEYKTSYLLERNG----LSAGWRGFSISHRLLKGDLLIFRLIEP--CK 209 889********************8884..34678****************888888....***********************9974..33 PP .EEEEE- CS B3 92 lvvkvfr 98 ++v ++r Solyc01g108130.2.1 210 MKVYIVR 216 5777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.2E-19 | 119 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-22 | 120 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.64E-21 | 125 | 216 | No hit | No description |
SMART | SM01019 | 2.2E-19 | 127 | 218 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.6E-13 | 127 | 216 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.843 | 127 | 218 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MEERNFIPVK RRTKSCKKRQ QQVEPHTLKS TSHSSASTST QTDPLSMIKT VQLDRKKMIP 60 KKPRSVKSKA KQVKSNHPRK AESHSIKRKG SKRTRINDLY DDVEAKYSVM ERAEKVLSSL 120 PDEFPSFAKC MLPSNVAHGF WLHLPKSFCN MHLPSSDTTV ILVDEWGNEY KTSYLLERNG 180 LSAGWRGFSI SHRLLKGDLL IFRLIEPCKM KVYIVRVNGQ EVVDAALCLM YWETLNTSTE 240 LDLVRKDKRK RKKAKHLAEP FFVDLSKPKE HVQNDSHCTV DLNVSPSEHR SENNSEDLDS 300 EVLQGSDVTN RLQSNEICCS ETSFLHDNPH KSVDCR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 244 | 252 | RKDKRKRKK |
2 | 248 | 252 | RKRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.12275 | 0.0 | callus| flower| fruit| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g108130.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004230782.1 | 0.0 | B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A3Q7ESP2 | 0.0 | A0A3Q7ESP2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g108130.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1628 | 23 | 71 | Representative plant | OGRP995 | 16 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 9e-38 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g108130.2.1 |
Entrez Gene | 101264981 |
Publications ? help Back to Top | |||
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