PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g108120.2.1

Common Name

LOC101264679

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Protein Properties

Length: 296aa MW: 33701.9 Da PI: 9.7624

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g108120.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.4	8.4e-16	64	149	1	94
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f k +++s+v+ +l+lp+ f++ h+ ++ ++t+tl des ++++ k+ ++++ l++GW++F +++L egD++vF+l + + Solyc01g108120.2.1 64 FMKPMIRSNVSGGFWLSLPRLFCQLHM--PRHDITVTLVDESQEEYKTKYLAERNG----LSGGWRGFSLSHDLVEGDVLVFQLFRFCKL- 147 89*******************9997..56889************555555....9********************8653333. PP .EE CS B3 92 lvv 94 +v Solyc01g108120.2.1 148 -KV 149 .44 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	8.5E-18	57	155	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.24E-21	59	155	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.54E-23	62	153	No hit	No description
Pfam	PF02362	2.4E-13	64	152	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.617	64	155	IPR003340	B3 DNA binding domain
SMART	SM01019	1.2E-17	64	155	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MKDRSLELKG WHKQVVCKKP KKLGSCKKKM AMMHNLYGQI DLATSAKYRA EEVLSRLSTK 60 YPSFMKPMIR SNVSGGFWLS LPRLFCQLHM PRHDITVTLV DESQEEYKTK YLAERNGLSG 120 GWRGFSLSHD LVEGDVLVFQ LFRFCKLKVY MVRANYLAEV DAALVLLHLD AHHKQIDPVH 180 QRQHSISMKQ VGIKRQRLSS QEGDDYSTEN MLHKHSHSTN MFKNLDLPSK GLAYETLTIV 240 DAVKASKLSD PPNGTFSSWN TRPTELEQLE VRPFSSGYSI EPALTLSGAE MIFRP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.23362	0.0	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g108120.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004230781.1	0.0	B3 domain-containing protein At5g42700
Refseq	XP_010315232.1	0.0	B3 domain-containing protein At5g42700
TrEMBL	A0A3Q7ESM6	0.0	A0A3Q7ESM6_SOLLC; Uncharacterized protein
STRING	Solyc01g108120.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13184	12	19
Representative plant	OGRP995	16	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-43	B3 family protein

Link Out ? help Back to Top
Phytozome	Solyc01g108120.2.1
Entrez Gene	101264679

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]