PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g107170.2.1 | ||||||||
Common Name | ZF2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 311aa MW: 32928 Da PI: 7.5339 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00048 | 135 | 157 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ L H +H Solyc01g107170.2.1 135 FRCSECPKVFTSYQALGGHKASH 157 89**********99999998877 PP | |||||||
2 | zf-C2H2 | 13.6 | 0.00019 | 195 | 217 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F++ L H r+H Solyc01g107170.2.1 195 HVCSICQKAFPTGQALGGHKRRH 217 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.09E-8 | 134 | 157 | No hit | No description |
SMART | SM00355 | 0.015 | 135 | 157 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.6E-12 | 135 | 159 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.889 | 135 | 157 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 137 | 157 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.09E-8 | 190 | 217 | No hit | No description |
SMART | SM00355 | 0.056 | 195 | 217 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.2E-11 | 195 | 219 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.64 | 195 | 222 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 197 | 217 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MSIEALKSPM AAKLSPTVAE LPPLEEIDDD SHNLDSWAKG KRSKRPRIEN PPTRDQYLAL 60 CLLMLANDDG TGFGKGKGNG TGSIGVEQTE KKPAELKPVF IEEKTEQLLK PVVDKEKTEQ 120 LLKPVVVKEK TEQLFRCSEC PKVFTSYQAL GGHKASHRKI NVPATGDDDS NPSTSTSTSG 180 GGVNISALNP SGRSHVCSIC QKAFPTGQAL GGHKRRHYEG KLGGNNRYIG GGGEGGGVHS 240 GSVVTTSDGG SGNGGGGAST PIARDFDLNM PASPGWQLDL TIDCGGRTQH PIEQEVESPM 300 PAKKPRLFFE * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.5126 | 0.0 | callus| flower| fruit| leaf| root |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g107170.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013336 | 0.0 | Lycopersicon esculentum clone 135126R, mRNA sequence | |||
GenBank | HQ738351 | 0.0 | Solanum lycopersicum ZF2 (ZF2) mRNA, complete cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001266186.1 | 0.0 | ZF2 protein | ||||
TrEMBL | I3NN78 | 0.0 | I3NN78_SOLLC; ZF2 | ||||
STRING | Solyc01g107170.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA735 | 24 | 95 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49930.1 | 2e-28 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g107170.2.1 |
Entrez Gene | 101055585 |
Publications ? help Back to Top | |||
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