PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g106250.2.1
Common NameLOC101244128, LOC101250170
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 337aa    MW: 39540.3 Da    PI: 5.8215
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g106250.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.65.3e-19591193
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                        f+k++  s  ++ +rl +p +f+  ++ + + ++++ l+d+ g+ W v +  +k +g  +++ GW++F ++n +++gDf+vF +dg++ f ++
  Solyc01g106250.2.1  5 FVKIF--SPENSGKRLKIPTSFT-YYK-NRKLPMKINLRDRFGNMWPVGV--NKIGGNLYFQYGWEKFIEDNSVEVGDFLVFDYDGNKMFDFK 91
                        78888..66667778*******8.554.45699*****************..*********************************99877444 PP
2B332.51.5e-102403281098
                         HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEEEE CS
                  B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelvvkvf 97 
                         + ++++l++p + +++++++   +  +t++d+ gr++  kl+ +k  gr++l +GW++ ++ n ++ +D ++ +++  +r ++ +l+v+v+
  Solyc01g106250.2.1 240 SKRRDQLYVPVDVVKDYKLE--LPSSMTIRDSIGREFVTKLNKWKD-GRIWLVGGWRSLCRWNLVEKNDHCICEFVrgKRnKDLHLRVQVL 327
                         567899***********988..55569999***********76666.5799********************99966324456777777776 PP

                         - CS
                  B3  98 r 98 
                         r
  Solyc01g106250.2.1 328 R 328
                         6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.1E-21396IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.888396IPR003340B3 DNA binding domain
PfamPF023628.7E-17590IPR003340B3 DNA binding domain
CDDcd100174.45E-15593No hitNo description
SuperFamilySSF1019361.18E-20598IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.4E-13596IPR003340B3 DNA binding domain
SuperFamilySSF1019367.65E-17227328IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-15227328IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.728231330IPR003340B3 DNA binding domain
CDDcd100173.10E-7232328No hitNo description
SMARTSM010191.7E-6234330IPR003340B3 DNA binding domain
PfamPF023627.7E-9240328IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEKGFVKIFS PENSGKRLKI PTSFTYYKNR KLPMKINLRD RFGNMWPVGV NKIGGNLYFQ  60
YGWEKFIEDN SVEVGDFLVF DYDGNKMFDF KLLGRTKCEK NGVGGLKAEE MIVEHQKSRE  120
SKEKNWASDS CNSFSSYDND VEYMGERDED EDEDEDKDEE YKETKKVACY VEDEEEDDED  180
EEEEDEGENQ RTNTHKKEAL RSKAFACKVR NRHDHFGVDI FKSGRATQPK NPYFVAKIRS  240
KRRDQLYVPV DVVKDYKLEL PSSMTIRDSI GREFVTKLNK WKDGRIWLVG GWRSLCRWNL  300
VEKNDHCICE FVRGKRNKDL HLRVQVLREG ESSVTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-122988104At1g16640
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.9090.0fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g106250.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2401900.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-100n21 map 1, complete sequence
GenBankAC2408550.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-100k15 map 1, complete sequence
GenBankAC2408750.0Solanum lycopersicum strain Heinz 1706 clone slm-43e1 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230633.20.0B3 domain-containing protein At5g60140-like
RefseqXP_004231373.10.0B3 domain-containing protein At5g60140-like
RefseqXP_019067400.10.0B3 domain-containing protein At5g60140-like
RefseqXP_019067402.10.0B3 domain-containing protein At5g60140-like
TrEMBLM1AQ141e-176M1AQ14_SOLTU; Uncharacterized protein
STRINGSolyc01g106230.2.10.0(Solanum lycopersicum)
STRINGSolyc01g106250.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Representative plantOGRP8585614
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.11e-19B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]