PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g106170.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 149aa MW: 17032.2 Da PI: 10.9752 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.5 | 1.8e-28 | 70 | 118 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ri+n++ rqvtfskRrng+lKKA+EL +LCda+v +iifsstgklye++ Solyc01g106170.2.1 70 RIDNTTSRQVTFSKRRNGLLKKAKELAILCDAQVGLIIFSSTGKLYEFA 118 9***********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.371 | 61 | 121 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.8E-39 | 61 | 120 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.09E-32 | 62 | 141 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.07E-42 | 62 | 134 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 63 | 117 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-29 | 63 | 83 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-25 | 70 | 117 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-29 | 83 | 98 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-29 | 98 | 119 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MIFLDRCQRV RLLWCTRASR GSKISDYFFT KPIFLLSLSL SICRISLLSK SLKLSRLIKE 60 MGRGKIVIQR IDNTTSRQVT FSKRRNGLLK KAKELAILCD AQVGLIIFSS TGKLYEFANN 120 SMKSTIDRYN KIKEENNNMN PMSEVKVT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 6e-19 | 61 | 136 | 1 | 76 | MEF2C |
5f28_B | 6e-19 | 61 | 136 | 1 | 76 | MEF2C |
5f28_C | 6e-19 | 61 | 136 | 1 | 76 | MEF2C |
5f28_D | 6e-19 | 61 | 136 | 1 | 76 | MEF2C |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Primarily expressed during lateral root formation and embryogenesis. {ECO:0000269|PubMed:11855641}. | |||||
Uniprot | TISSUE SPECIFICITY: Specifically expressed in root. {ECO:0000269|PubMed:11855641}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g106170.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC239238 | 1e-109 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-156i17 map 1, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019067399.1 | 1e-55 | MADS-box transcription factor 23-like | ||||
Swissprot | Q9SZJ6 | 3e-42 | AGL21_ARATH; Agamous-like MADS-box protein AGL21 | ||||
TrEMBL | A0A3Q7ERK5 | 7e-61 | A0A3Q7ERK5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g106170.2.1 | 1e-103 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 1e-44 | AGAMOUS-like 21 |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g106170.2.1 |