PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g103180.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 651aa MW: 74341.4 Da PI: 7.8627

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g103180.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.3	3.3e-20	62	155	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 +fY e+Ak +GFs+r+++++ + + t+r fvC + g++ + +++k +r+r+++r+gC+a ++++k++ +w+vt + ++HnH Solyc01g103180.2.1 62 EFYAEFAKGCGFSIRRHRTEGKaGVGKGLTRRYFVCHRAGNTPVKAANDSKPQRNRKSSRCGCQAYMRISKTTdlgVPEWRVTGFMNHHNH 152 6*************99887745667799************999******************99777789********** PP FAR1 88 ela 90 el Solyc01g103180.2.1 153 ELL 155 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.3E-17	62	155	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.1E-20	249	339	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.755	527	560	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.3E-6	531	558	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.2E-6	535	562	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 651 aa Download sequence Send to blast
MSEEAGHMMG LYGDPSDQRS LSLDDTSSTE ESPDQTRLSL ETTNDAVPYI GQRFPNHDAA 60 YEFYAEFAKG CGFSIRRHRT EGKAGVGKGL TRRYFVCHRA GNTPVKAAND SKPQRNRKSS 120 RCGCQAYMRI SKTTDLGVPE WRVTGFMNHH NHELLEPNQQ MMRLMELEKG VEPGYLPFTE 180 KDVRNLLQSF RKVDPEDESI DLLRMCRNIK EKDPNFKYDF SLDSNNRLEN IAWSYASSIQ 240 SYDIFGDAVV FDTTHRLTAF DMPLGIWVGV NNYGMPCFFG CVLLREESLR SYSWALKVFL 300 AFMNGKAPQT VLTDQNMCLK EAINLEMPTT KHALCIWLVV AKYPSWFNAV LGERYNEWKA 360 EFNRLYNLES VEDFELGWRD MVNSYGLHTN RHIASLFALR SLWALPYLRS HFFAGMTTTG 420 HSKSINAFIQ RFLSAQSRLA HFVEQVAVTV DFKDQTGEQQ TMQQNLQNIC LKTGAPMEAH 480 AATVLTPFAF TKLQEQLVLA AHYASFQMED GFLVRHHTKL EGGRKVYWVP REGIVSCSCH 540 QFEFSGILCR HALRVLSTGN CFQIPDRYLP HRWRRISTPA TKALQNTQSD HTERVQLLQS 600 MVSTLVTESA KSRERLDIAT ENVSILLSRI REQPISSLGI RESSSNQRNL *

Sequence ? help Back to Top

Protein Sequence Length: 651 aa Download sequence Send to blast

MSEEAGHMMG LYGDPSDQRS LSLDDTSSTE ESPDQTRLSL ETTNDAVPYI GQRFPNHDAA  60
YEFYAEFAKG CGFSIRRHRT EGKAGVGKGL TRRYFVCHRA GNTPVKAAND SKPQRNRKSS  120
RCGCQAYMRI SKTTDLGVPE WRVTGFMNHH NHELLEPNQQ MMRLMELEKG VEPGYLPFTE  180
KDVRNLLQSF RKVDPEDESI DLLRMCRNIK EKDPNFKYDF SLDSNNRLEN IAWSYASSIQ  240
SYDIFGDAVV FDTTHRLTAF DMPLGIWVGV NNYGMPCFFG CVLLREESLR SYSWALKVFL  300
AFMNGKAPQT VLTDQNMCLK EAINLEMPTT KHALCIWLVV AKYPSWFNAV LGERYNEWKA  360
EFNRLYNLES VEDFELGWRD MVNSYGLHTN RHIASLFALR SLWALPYLRS HFFAGMTTTG  420
HSKSINAFIQ RFLSAQSRLA HFVEQVAVTV DFKDQTGEQQ TMQQNLQNIC LKTGAPMEAH  480
AATVLTPFAF TKLQEQLVLA AHYASFQMED GFLVRHHTKL EGGRKVYWVP REGIVSCSCH  540
QFEFSGILCR HALRVLSTGN CFQIPDRYLP HRWRRISTPA TKALQNTQSD HTERVQLLQS  600
MVSTLVTESA KSRERLDIAT ENVSILLSRI REQPISSLGI RESSSNQRNL *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.16994	0.0	fruit\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g103180.2.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010314356.1	0.0	protein FAR1-RELATED SEQUENCE 11 isoform X2
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A3Q7EPN6	0.0	A0A3Q7EPN6_SOLLC; Uncharacterized protein
STRING	Solyc01g103180.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10896	21	24
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Solyc01g103180.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]