PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g096850.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 866aa MW: 97286.7 Da PI: 6.9623

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g096850.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.9	1.2e-16	64	139	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +f+++YA++vGFs+ + + ++ k +g i++ +f Cske r++++++ C+a+l++++++++ w+vtk++++HnH+++ Solyc01g096850.2.1 64 NFFDAYARRVGFSIHVGQYSRAKPDGPIISWDFSCSKEILRRKNTES--------------CNAMLRIERKSSDGWVVTKFVEDHNHSIV 139 69***********************************99998777..............************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-13	64	139	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.2E-29	279	371	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.165	556	592	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	8.5E-11	557	590	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.6E-8	567	594	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 866 aa Download sequence Send to blast
MNNKVIDIEG QKRKKSGERA VEPNQNPKQG LPDNFTERDT IIEVDGEEKP YVGMEFQTEE 60 AAKNFFDAYA RRVGFSIHVG QYSRAKPDGP IISWDFSCSK EILRRKNTES CNAMLRIERK 120 SSDGWVVTKF VEDHNHSIVN PSKVHYLRPR KHFAGASKTV GEIPGAPTDI MVPPVVVPVE 180 GNHAFVSSNE GVKDAPPMES NRVTKNFSPV IPIMFIQPCS RKRTLGRDAH NLLDYFKKMQ 240 AENPGFYYAI QLDDENRMTN AFWADARSRI AYSHFGDAVI FDTMYRPNQF QVPFAPFTGV 300 NHHGQMVLFG CGLLLDESES SFTWLFRTWL SSMNNRPPVS ITTDQDRAIK AAVNLVLPGT 360 RHCICKWHIL REGQERLAHI YMAHPSFYGE LYSCINYSET IEDFESCWTS VLDKYDLGKN 420 EWLQAVYNAR DQWAPVYFRD TFFAALPSNQ GVTSFFDGYV NQQTTLPMFF KQYERALESS 480 LEREIASDFD TNCTAPMLRT PSPMEQQAAN LFTKKVFAKF QEELVETFAH TANKIDGDET 540 LSKFRVAKYE QDDKAYIVML NLAQMKASCS CQMFEYSGIL CRHILTVFTV TNVLTVPSLY 600 ILKRWTRNAK VGQGSDEDIV KQGINSLTSR FNYLCLEALR YAEEGAVSAE TFDAAVSALK 660 DGLRKISVVA KSVGKPLSSQ GSESTQDGSI KKTPATSDTL PSLWAWQDTM PRQFNLNDGG 720 LTAGDLNQPT MTPVAINHDG GLADNVVVYT CFKSMTWVIE NKSPASKVAV INLKLQDYGK 780 NPAGETEVQF RLTRVALEPM LNSMVCISQQ LSLPANRVAV INLKLQDTKT PSGETEVKFQ 840 VSRDTLGSML RSMVAKLLAA VLIII*

Sequence ? help Back to Top

Protein Sequence Length: 866 aa Download sequence Send to blast

MNNKVIDIEG QKRKKSGERA VEPNQNPKQG LPDNFTERDT IIEVDGEEKP YVGMEFQTEE  60
AAKNFFDAYA RRVGFSIHVG QYSRAKPDGP IISWDFSCSK EILRRKNTES CNAMLRIERK  120
SSDGWVVTKF VEDHNHSIVN PSKVHYLRPR KHFAGASKTV GEIPGAPTDI MVPPVVVPVE  180
GNHAFVSSNE GVKDAPPMES NRVTKNFSPV IPIMFIQPCS RKRTLGRDAH NLLDYFKKMQ  240
AENPGFYYAI QLDDENRMTN AFWADARSRI AYSHFGDAVI FDTMYRPNQF QVPFAPFTGV  300
NHHGQMVLFG CGLLLDESES SFTWLFRTWL SSMNNRPPVS ITTDQDRAIK AAVNLVLPGT  360
RHCICKWHIL REGQERLAHI YMAHPSFYGE LYSCINYSET IEDFESCWTS VLDKYDLGKN  420
EWLQAVYNAR DQWAPVYFRD TFFAALPSNQ GVTSFFDGYV NQQTTLPMFF KQYERALESS  480
LEREIASDFD TNCTAPMLRT PSPMEQQAAN LFTKKVFAKF QEELVETFAH TANKIDGDET  540
LSKFRVAKYE QDDKAYIVML NLAQMKASCS CQMFEYSGIL CRHILTVFTV TNVLTVPSLY  600
ILKRWTRNAK VGQGSDEDIV KQGINSLTSR FNYLCLEALR YAEEGAVSAE TFDAAVSALK  660
DGLRKISVVA KSVGKPLSSQ GSESTQDGSI KKTPATSDTL PSLWAWQDTM PRQFNLNDGG  720
LTAGDLNQPT MTPVAINHDG GLADNVVVYT CFKSMTWVIE NKSPASKVAV INLKLQDYGK  780
NPAGETEVQF RLTRVALEPM LNSMVCISQQ LSLPANRVAV INLKLQDTKT PSGETEVKFQ  840
VSRDTLGSML RSMVAKLLAA VLIII*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g096850.2.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004230060.1	0.0	protein FAR1-RELATED SEQUENCE 3-like isoform X1
Refseq	XP_010327464.1	0.0	protein FAR1-RELATED SEQUENCE 3-like isoform X1
Refseq	XP_010327469.1	0.0	protein FAR1-RELATED SEQUENCE 3-like isoform X1
Refseq	XP_010327473.1	0.0	protein FAR1-RELATED SEQUENCE 3-like isoform X1
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A3Q7EM51	0.0	A0A3Q7EM51_SOLLC; Uncharacterized protein
STRING	Solyc01g096850.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	Solyc01g096850.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]