PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g095880.1.1 | ||||||||
Common Name | LOC104645459 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 180aa MW: 20749.8 Da PI: 9.6116 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.4 | 2.3e-12 | 70 | 161 | 8 | 86 |
-HHHHT.T-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 8 sdvlks.grlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 sd+++s +r+ +p ++a++ +++ ++++++++d++g ++k++ +k+ +r v+ +GW++ v+ n+L gD + + + Solyc01g095880.1.1 70 SDTNSSlSRFLIPAECATNLlqhmteserekiQSDDDKGIDISVMDPKGDLHNMKFTEWKSLKRLVFNRGWNKLVENNQLHKGDLLSLWHY 160 555554599******9966699999888877755555999*********999999988**************************9988755 PP S CS B3 86 g 86 + Solyc01g095880.1.1 161 R 161 4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.2E-17 | 57 | 166 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-16 | 61 | 163 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.839 | 64 | 177 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.15E-12 | 65 | 175 | No hit | No description |
Pfam | PF02362 | 1.3E-9 | 73 | 159 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MTTIRLFGNN ITVLRLFGVQ FSPLNNNNVQ QRDDRVMNMP DLLPPSLRLN IESVRGSEPV 60 HMGRKYLENS DTNSSLSRFL IPAECATNLL QHMTESEREK IQSDDDKGID ISVMDPKGDL 120 HNMKFTEWKS LKRLVFNRGW NKLVENNQLH KGDLLSLWHY RSFNNKPCFA VNIIPKPKQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g095880.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC240226 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone sle-73o18 map 1, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015081580.2 | 1e-118 | putative B3 domain-containing protein At5g35780 | ||||
TrEMBL | A0A3Q7EMI5 | 1e-129 | A0A3Q7EMI5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g095880.1.1 | 1e-130 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11679 | 11 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03170.1 | 6e-10 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g095880.1.1 |
Entrez Gene | 104645459 |
Publications ? help Back to Top | |||
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