PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g095640.1.1 | ||||||||
Common Name | LOC104649435 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB_related | ||||||||
Protein Properties | Length: 95aa MW: 11458.2 Da PI: 9.3794 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.9 | 1.3e-09 | 32 | 72 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r++++E++l+++ +k+ G + W +Ia +++ gRt++++ +w Solyc01g095640.1.1 32 RMSKQEEDLIYRMHKLVGDR-WGLIAGRIP-GRTAEEIERFWI 72 689***************99.*********.*********995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 5.4E-7 | 29 | 77 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.50E-6 | 32 | 71 | No hit | No description |
Pfam | PF00249 | 1.1E-8 | 33 | 72 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.26E-8 | 34 | 73 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.7E-11 | 34 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.144 | 34 | 71 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
MDQNLHHRHK LMHHRCCSHE EEVNSMEWEF IRMSKQEEDL IYRMHKLVGD RWGLIAGRIP 60 GRTAEEIERF WIMRHSDGFA HKRRQTIKKS LPPT* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Ubiquitous in young leaves. Later, restricted to the leaf base in the trichome initiation zone. In mature leaves, confined to trichome cells. {ECO:0000269|PubMed:12356720}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, siliques and inflorescences. {ECO:0000269|PubMed:12356720}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Involved in epidermal cell fate specification. Negative regulator of trichome development, including endoreplication, by lateral inhibition involving intercellular interactions. Promotes the formation of hair developing cells (trichoblasts) in H position in root epidermis, probably by inhibiting non-hair cell (atrichoblasts) formation. {ECO:0000269|PubMed:10368181, ECO:0000269|PubMed:12356720}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g095640.1.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negative autoregulation. Repressed by CPC. {ECO:0000269|PubMed:12356720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238926 | 3e-70 | Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-330o5 map 1, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010326918.1 | 4e-65 | transcription factor TRY | ||||
Swissprot | Q8GV05 | 5e-33 | TRY_ARATH; Transcription factor TRY | ||||
TrEMBL | K4AZV3 | 9e-64 | K4AZV3_SOLLC; MYB-like transcriptional factor TRY | ||||
STRING | Solyc01g095640.1.1 | 2e-64 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11707 | 18 | 24 | Representative plant | OGRP4207 | 8 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53200.1 | 2e-35 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g095640.1.1 |
Entrez Gene | 104649435 |