PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g095100.2.1 | ||||||||
Common Name | LOC101261749 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 356aa MW: 39035.9 Da PI: 6.0427 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.7 | 3.8e-31 | 172 | 230 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+ver+++dp+++++tY+ eHnh+ Solyc01g095100.2.1 172 SDMWSWRKYGQKPIKGSPYPRGYYRCSTSkGCLARKQVERNRSDPNMFIVTYTAEHNHP 230 79************************9988****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.3E-31 | 162 | 232 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 35.026 | 166 | 232 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.29E-27 | 169 | 232 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.7E-37 | 171 | 231 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.4E-26 | 173 | 230 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MEEDWDLHAV VRGCAASSTA AAAAATTTAT TNSCCSSFQP RQDGNFFSFQ DPFVPRFDNP 60 ISDFEELHNL YKPFFPKAQQ IPLSPQNNTN NIPISPLSVL GGLQDLSPQQ TLKQQQHIHQ 120 LNSTRLTQPK QSPLSAYGST TTSASHVQSP RPKRRKNQLK KVCQVPAEGL SSDMWSWRKY 180 GQKPIKGSPY PRGYYRCSTS KGCLARKQVE RNRSDPNMFI VTYTAEHNHP MPTHRNSLAG 240 STRQKPANSE AGTVSDSNKP TSSSPVSSPA CHSPATEKQE SSRDEREDIF EDDDDEFGSS 300 NMGLDNMEPA DDDFFEGLDE LAAQTTGDCF SDNFPGSMQL PWMSNNATTT AAGGV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 7e-24 | 156 | 233 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 7e-24 | 156 | 233 | 2 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.8146 | 0.0 | callus |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00422 | DAP | Transfer from AT4G01250 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g095100.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013284 | 8e-12 | Lycopersicon esculentum clone 134891F, mRNA sequence | |||
GenBank | FJ598886 | 8e-12 | Solanum lycopersicum COSII_At1g13380 gene, partial cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004229932.1 | 0.0 | WRKY transcription factor 22 | ||||
TrEMBL | M0ZGA4 | 0.0 | M0ZGA4_SOLTU; Uncharacterized protein | ||||
STRING | Solyc01g095100.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2591 | 24 | 57 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 1e-72 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g095100.2.1 |
Entrez Gene | 101261749 |
Publications ? help Back to Top | |||
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