PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g087170.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 439aa    MW: 47229.4 Da    PI: 7.4045
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g087170.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07285305526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f++ G C++Gd C +aHg
  Solyc01g087170.2.1 285 PCPEFRK-GACRRGDMCEYAHG 305
                         8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.27E-1612139IPR020683Ankyrin repeat-containing domain
PfamPF127962.7E-1147129IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.3E-1758139IPR020683Ankyrin repeat-containing domain
CDDcd002041.05E-1559138No hitNo description
SMARTSM002480.00336090IPR002110Ankyrin repeat
PROSITE profilePS5029716.28260168IPR020683Ankyrin repeat-containing domain
SMARTSM002481.0E-495127IPR002110Ankyrin repeat
PROSITE profilePS5008811.56895130IPR002110Ankyrin repeat
PRINTSPR014159.9E-596111IPR002110Ankyrin repeat
PRINTSPR014159.9E-5114128IPR002110Ankyrin repeat
SMARTSM003569.5E-6280306IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-4283307IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-5285305IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981285307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4313343IPR000571Zinc finger, CCCH-type
SMARTSM0035681315338IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MKGITKLTVE TEDSFSSLLE LAANNDLEGF KRSVELDASA IDEVGLWLVR KKGAKQIVNE  60
ERTPLMVAAT YGSLDVLKLI ISNPVVDVNR ACGPNKWTAL HCAASSGSVN VIDAVKLLLS  120
AGGDPNVEDA NGQRPADVIV VPPKLPGTRA SLEKLLLNNS SDGSVGDCKL TVSVATSDAS  180
SPILSSSPEN GSPCSSLESS SSPMASKFSD LPANSAREKK EYPIDPSLPD IQNSIYSTDE  240
FRMFSFKVRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKYH YSCVPCPEFR KGACRRGDMC  300
EYAHGVFECW LHPAQYRTRL CKDGTSCARR ICFFAHTTEE LRPLYVSTGS AVPSPRSAAS  360
AASVMDMAAA LNLFPGSPSA HSVMSPSAFN QPMSPTANGM SHPSAPWPQP NVPTLHLPGS  420
NLQSSRLRSS LSARDIPN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.96920.0callus| cell culture| flower| fruit| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g087170.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229627.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A3Q7EIZ50.0A0A3Q7EIZ5_SOLLC; Uncharacterized protein
STRINGSolyc01g087170.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-179CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]