PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g073950.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 753aa    MW: 84786.6 Da    PI: 10.2121
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g073950.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.41e-101767448
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                        W+t+E++ll+ avk++G ++W+++a +++        +t+  ck+++++++
  Solyc01g073950.2.1 17 WSTWEELLLASAVKRHGLKDWESVAMELQnrislpALLTAQICKEKYRDLR 67
                        *****************************9999998899999****99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.771967IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.8E-61166IPR009057Homeodomain-like
SuperFamilySSF466891.79E-61172IPR009057Homeodomain-like
SMARTSM007177.3E-61369IPR001005SANT/Myb domain
CDDcd001671.08E-61766No hitNo description
PfamPF002496.4E-91766IPR001005SANT/Myb domain
SMARTSM002971.9E-16302411IPR001487Bromodomain
Gene3DG3DSA:1.20.920.103.2E-16311413IPR001487Bromodomain
SuperFamilySSF473701.02E-17312408IPR001487Bromodomain
CDDcd043691.68E-14313406No hitNo description
PfamPF004392.3E-10317396IPR001487Bromodomain
PROSITE profilePS5001412.94321392IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    Send to blast
MEKDSAAATT TTKKTIWSTW EELLLASAVK RHGLKDWESV AMELQNRISL PALLTAQICK  60
EKYRDLRRRF MNSYNNSYDE KIIEQDVDGN GDVTIPWIEE LRKLRVAELQ QEVQRYDLSI  120
QSLELKVKKM EEEREQSLKA QSLDDGQKPD LEDVKEERSQ NDKNSGADVK PEDSTGKPVS  180
SEESDRENRS FNESNSTENR ETGVKNEPEP VEIGEDKPVQ EIKPVSEEDS YNDSSSDRQE  240
EKKARRDSGD LRDTVSGSKE ETRENSDVQS TATLTKRKRQ RGGDGGRSGG DAAEMGSPAV  300
GIKREGAAKS EPLIEFLDVI RSHKRGSVFK RRLDSQKTDK YKSMIRQHMD LETVQARIDD  360
GSYCSCPSKF YLDLLLIFNN AIVYFAKSSS ETTAANELRG IVMEELKRAR TQSKDLSPFK  420
IQPKPELERS DSLLAKHKST VPIVVCRKRS SISAKAAASS GTNKTEKPAD SKPPLNPKPP  480
AVKSSSNEEE SSIKLGVKEK PVTGVRSMRR SSKGRSNNNN ASQSNSNQNT NAKQSNSSGE  540
KKEEVKPEKK KEEGKKRGAA ADFLKRIKKN SPTKGTLVEA LKNNPPEEVV VVKGKNSKDQ  600
QKKKVDERRE APVRRSGGGG GGSGASKDEG SPSKRSVGRP PKRGGREVVV QEKRGRENSE  660
KDDSTKRPKK RSRRRNKRKK LKRKKILSEH VCMELLIFYI PVLFFFQLKK YTIHNIFLRS  720
IIIIHLYLVP NIAIIDFLDY IFQDTVFIIL KK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275280KRKRQR
2665680KRPKKRSRRRNKRKKL
3667684PKKRSRRRNKRKKLKRKK
4668684KKRSRRRNKRKKLKRKK
5669677KRSRRRNKR
6672678RRRNKRK
7672684RRRNKRKKLKRKK
8673680RRNKRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g073950.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2453332e-08Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-40e1 map 10, complete sequence
GenBankAC2453502e-08Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-35c14 map 10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229352.10.0ankyrin repeat, bromo and BTB domain-containing protein DDB_G0293800
TrEMBLA0A3Q7EH340.0A0A3Q7EH34_SOLLC; Uncharacterized protein
STRINGSolyc01g073950.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42682136
Representative plantOGRP38051123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.11e-59DNA-binding bromodomain-containing protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]