PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g066730.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 301aa    MW: 33023.4 Da    PI: 5.0409
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g066730.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.21e-131158148
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                        k+i  +s r+v fskRr+g++KKA  L   ++a+va+++fss+gk y+
  Solyc01g066730.2.1 11 KKITKESARKVAFSKRRKGLFKKAVQLESKTGAKVAILVFSSSGKPYT 58
                        678999**************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.413363IPR002100Transcription factor, MADS-box
SMARTSM004326.2E-17362IPR002100Transcription factor, MADS-box
CDDcd001209.56E-21458No hitNo description
SuperFamilySSF554555.76E-18472IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-11525IPR002100Transcription factor, MADS-box
PfamPF003196.9E-181258IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-112540IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-114061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGKGKQKIEI KKITKESARK VAFSKRRKGL FKKAVQLESK TGAKVAILVF SSSGKPYTCG  60
DVETLCGISD SFNLQTHSES NSIWDSFNLQ THSESNGIWD SFNLERPCES NGMWDSFNII  120
EGPCSSSGKN GMWDSFNLER PCSSSGQSGM WDSFNLGRPC ESNGMWDSFN IIEGPCSSSG  180
QNGMWDSFNL ERPCSSSGQS GMWDSFNLER HCSSSGIPSG SNGIWDSFNV ETHCSSSESC  240
GMSDSFNVET HCSSSGQSGT WDSFNVEACH NVNELLLLKA HLESTREKLL ESQFLDSLWS  300
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g066730.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2459440.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone sle-17e7 map 1, complete sequence
GenBankAC2466470.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-49k13 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025886320.10.0agamous-like MADS-box protein AGL97
TrEMBLA0A3Q7EFH40.0A0A3Q7EFH4_SOLLC; Uncharacterized protein
STRINGSolyc01g066730.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1846544
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17310.11e-09M-type_MADS family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]