PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g066500.1.1
Common NameLOC101259878
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 310aa    MW: 34544.4 Da    PI: 4.7524
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g066500.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.71.3e-171660448
                        -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
              SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                         ++s r+vtfskRr+g++KKAeEL +  +a++a+++fs+ g+ly+
  Solyc01g066500.1.1 16 ASNSSRKVTFSKRRTGLFKKAEELATKFGARIALLVFSPAGRLYT 60
                        57889***************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.039565IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-20564IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.1E-17664IPR002100Transcription factor, MADS-box
CDDcd001208.64E-22662No hitNo description
PRINTSPR004041.1E-13727IPR002100Transcription factor, MADS-box
PfamPF003192.1E-191760IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-132742IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-134263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MTKGTGKKKI DIKKLASNSS RKVTFSKRRT GLFKKAEELA TKFGARIALL VFSPAGRLYT  60
SGDVSIFENN GFPSKPHLST ETASNSYVKP STLRLKNLNV EGCSEIFSPD GVHYSAGEIP  120
IVEDNLQNNG FSSNSHLSTD FSSNFYEDWS TLWLKNFKGN NEIFSPPGGF YNSGEFPIVA  180
DELKNNEFPS NSDLSIEISS NSYAKPSTLH LKNFNAEGCS EIFSTDGRFY SSNEFPIIND  240
TLKNNGFSSN SDLSTDLGSN LYEYWSMENF NVEECSSIEE LMLLKEKLEE KRDEIILKME  300
AEFIDSLLV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g066500.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2457900.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone sle-4k9 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229320.10.0myocyte-specific enhancer factor 2A-like
TrEMBLA0A3Q7EFB10.0A0A3Q7EFB1_SOLLC; Uncharacterized protein
STRINGSolyc01g066500.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1716844
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-11AGAMOUS-like 61
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]