PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g015210.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 285aa    MW: 32630.3 Da    PI: 5.818
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g015210.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.22.6e-1211100198
                         EEEE-..-HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                  B3   1 ffkvltpsdvlks..grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                         f+k+  +sd l +  + lv+ k+++ ++++++     + le+++g+sWev++    ++++++++kGWk+F+    + ++  ++F+++  s 
  Solyc01g015210.1.1  11 FIKIICSSDELCHlrNPLVFAKSHC-KNMLSP-----VFLESPHGKSWEVEV--IMSQDEIWIAKGWKSFCPYYSISVKSLLMFTYIPCSH 93 
                         6777777777766555667777777.444443.....***************..889999*************************985455 PP

                         E..EEEEE- CS
                  B3  90 felvvkvfr 98 
                         f   v++++
  Solyc01g015210.1.1  94 F--DVTIYD 100
                         5..777766 PP
2B3322.2e-101972641687
                         EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         +++p ++ +   ++  +   ++l +e+g++W+v +    + g++++++GW+ F k+n++  g++  Fkl++ 
  Solyc01g015210.1.1 197 MTIPLRYSQGTYII--NMANMRLVSEEGEEWRVDI--GYNAGKVIIKGGWSAFQKDNKISNGETWRFKLIRG 264
                         56666665444223..23469**************..999999*************************9974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-184102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-174102IPR015300DNA-binding pseudobarrel domain
CDDcd100171.36E-119100No hitNo description
SMARTSM010195.9E-611102IPR003340B3 DNA binding domain
PfamPF023627.9E-92197IPR003340B3 DNA binding domain
PROSITE profilePS508639.78442102IPR003340B3 DNA binding domain
SuperFamilySSF1019369.42E-12179272IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.6E-12181271IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.053182276IPR003340B3 DNA binding domain
SMARTSM010190.0026185276IPR003340B3 DNA binding domain
PfamPF023622.0E-8196263IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MVNSSSNYPN FIKIICSSDE LCHLRNPLVF AKSHCKNMLS PVFLESPHGK SWEVEVIMSQ  60
DEIWIAKGWK SFCPYYSISV KSLLMFTYIP CSHFDVTIYD QSTSIIEYPI HQDIEVDEEE  120
DVIPFFQYNA IAIEEDIPVY LQANANVIEQ DKEVGEANSR SEQVNPKIYR SLHNLLNING  180
DKLHFEMVIK KAHSTYMTIP LRYSQGTYII NMANMRLVSE EGEEWRVDIG YNAGKVIIKG  240
GWSAFQKDNK ISNGETWRFK LIRGPIANVL QVHKNPTLLL IATN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g015210.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2459521e-144Solanum lycopersicum strain Heinz 1706 chromosome 1 clone sle-43h23 map 1, complete sequence
GenBankAC2466941e-144Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-56k12 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019067668.10.0B3 domain-containing protein REM5-like
TrEMBLK4AUF50.0K4AUF5_SOLLC; Uncharacterized protein
STRINGSolyc01g015210.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7499524
Representative plantOGRP1718538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.14e-10B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]