PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g009510.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 191aa    MW: 21312.7 Da    PI: 7.6031
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g009510.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.66.2e-14112155548
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                         kr+rr+++NR +A+rsR+RK+a+++eLe   ++   eN++Lk+ 
  Solyc01g009510.1.1 112 KRQRRMIRNRASAQRSRARKQAYTAELEAQLEKVRDENERLKSI 155
                         9****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.8E-9107172IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.864110154IPR004827Basic-leucine zipper domain
PfamPF001702.2E-11112155IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-11112154No hitNo description
Gene3DG3DSA:1.20.5.1701.5E-14112154No hitNo description
CDDcd147071.27E-15112153No hitNo description
PROSITE patternPS000360115130IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MDVSEEESVG CYKVQPPQVQ EGFSDNLPDS ASLNELFKHF YQPEGHDVGS NSTHEGFGLS  60
YGIDQIFEQA ADVIAPARGN AQNLNSDGSD AAGGGNRRRR AATIEQETLM EKRQRRMIRN  120
RASAQRSRAR KQAYTAELEA QLEKVRDENE RLKSIVLIDD VRFLILQSSL NSPSSPSPTP  180
NFRKIIYKKK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g009510.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010326740.11e-113ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBLA0A3Q7EAF81e-111A0A3Q7EAF8_SOLLC; Uncharacterized protein
STRINGSolyc01g009510.1.11e-138(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1843744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44460.18e-07bZIP family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]