PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc01g007070.2.1 | ||||||||
Common Name | LOC101244699 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TALE | ||||||||
Protein Properties | Length: 701aa MW: 76787.6 Da PI: 6.6848 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29 | 1.9e-09 | 401 | 438 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Solyc01g007070.2.1 401 FEHflHPYPKDSDKMMLAKQTGLTRSQVSNWFINARVR 438 554459******************************88 PP | |||||||
2 | BELL | 113.4 | 1.2e-36 | 265 | 336 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+++l+eV++rY++y++q+q vi+ e++ag+gsak Yt+lAl++iS++FrcLkdai++qi Solyc01g007070.2.1 265 ERQEIQMKKAKLVNMLDEVEQRYRHYHHQMQSVINWLEQAAGIGSAKTYTALALQTISKQFRCLKDAIIGQI 336 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.1E-54 | 189 | 334 | IPR006563 | POX domain |
Pfam | PF07526 | 9.4E-46 | 196 | 332 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.147 | 379 | 442 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.7E-10 | 382 | 446 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.01E-13 | 382 | 443 | No hit | No description |
SuperFamily | SSF46689 | 5.99E-17 | 383 | 448 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-28 | 385 | 448 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.8E-18 | 399 | 438 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009610 | Biological Process | response to symbiotic fungus | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0010201 | Biological Process | response to continuous far red light stimulus by the high-irradiance response system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 701 aa Download sequence Send to blast |
MASYFHGNSE IQEGNDGLQT LILMNPGYVG FSEAQHHHAP PPPPQGGGGS NIVFFNSNPL 60 GNSINLSHAP PPPPSQQQQF VGIPLATAAF TAPSQDSGNN NNNNESFSGL HGFLARSSPY 120 GFYNPANDIT AAREVTRAHQ QQQQGLSLSL SSSQQPSFGS FTAAREIVSS PTGSGSASGI 180 QQQQQQQQQS ICSVPLSSKY MKAAQELLDE VVNVGKSMKS SNSTEVVVYN DVKKSKNMVD 240 MDVQLDGVGP AEKDGAPTNE LSTAERQEIQ MKKAKLVNML DEVEQRYRHY HHQMQSVINW 300 LEQAAGIGSA KTYTALALQT ISKQFRCLKD AIIGQIRAAS KTLGEEDSLG GKIEGSRLKF 360 VDNQLRQQRA LQQLGMIQHN AWRPQRGLPE RAVSVLRAWL FEHFLHPYPK DSDKMMLAKQ 420 TGLTRSQVSN WFINARVRLW KPMVEEMYLE EIKEHEQNTL GQEKTSKVGE QNEDSTTSRS 480 IATQDKSPGS DSQKQDNPAS SIPMSNATSI PPIGMNIRNQ SAGFNLIGSP DIESINVTQG 540 SPKKPRSNEM LQHSPNSIPS INMDVKPNEE QMSMKFGDDR QDRDGFSLMG GPMNFMGGFG 600 AYPIGEIARF STEQFSAPYS TSGTVSLTLG LPHNENLSMS ATHHSFLPIP TQNVQIGEPN 660 HEFGSLNTPT SAHSTSNVYE NFNIQNRKRF AAPLLPDFVT * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 4e-16 | 388 | 446 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 4e-16 | 388 | 446 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.12188 | 0.0 | callus| flower| fruit| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc01g007070.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004228612.1 | 0.0 | BEL1-like homeodomain protein 1 isoform X1 | ||||
Swissprot | Q9SJ56 | 1e-153 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A3Q7ERP5 | 0.0 | A0A3Q7ERP5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g007070.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1478 | 24 | 67 | Representative plant | OGRP133 | 16 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-130 | BEL1-like homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | Solyc01g007070.2.1 |
Entrez Gene | 101244699 |
Publications ? help Back to Top | |||
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