PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g006650.1.1
Common NameLOC101249950
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family EIL
Protein Properties Length: 661aa    MW: 73805.4 Da    PI: 6.6342
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g006650.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3413.52.4e-126383962348
                         XXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                EIN3   2 elkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLr 92 
                         el++rmwkd+++lkrlke++k    ++ a ++++ +++ ++qa rkkmsraQDgiLkYMlk mevcna+GfvYgiip+kgkpv+g+sd++r
  Solyc01g006650.1.1  38 ELERRMWKDRVKLKRLKEKQKLA--ARLA-AEKQDNKQVTDQATRKKMSRAQDGILKYMLKLMEVCNARGFVYGIIPDKGKPVSGSSDNIR 125
                         9****************999963..4555.8999999****************************************************** PP

                         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHH CS
                EIN3  93 aWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwge 183
                         aWWkekv+fd+ng aai+ky+a++l+ +++ ++  ++ + ++ l++lqD+tlgSLLs+lmqhcdppqr++plekg++pPWWPtG+e ww++
  Solyc01g006650.1.1 126 AWWKEKVKFDKNGLAAIAKYEAECLARGDGVGS--QNGNPQSVLEDLQDATLGSLLSSLMQHCDPPQRKYPLEKGISPPWWPTGDEGWWAK 214
                         **************************9988888..66999999************************************************ PP

                         HT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XX......X CS
                EIN3 184 lglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah..ss......s 266
                         +gl+k q+ ppy+kphdlkk+wkv+vLtavikhmsp+i++ir+l r+sk+lqdkm+akes ++l+vl++ee+ +++  ++  ss       
  Solyc01g006650.1.1 215 MGLPKGQK-PPYRKPHDLKKMWKVGVLTAVIKHMSPDIAKIRRLIRKSKSLQDKMTAKESSIWLAVLSREEATLQQAGSEngSSsveepvR 304
                         ********.9*****************************************************************9999966335777554 PP

                         XXXXXXXXXXXXXXXXXXX..........XXXXXX.XXXXXXXXXX..........XXXXXXXXXXXXXXXXXXXXX......XXXXXXX. CS
                EIN3 267 lrkqspkvtlsceqkedve..........gkkeskikhvqavktta..........gfpvvrkrkkkpsesakvsskevsrtcqssqfrgs 337
                          r +++k  +s+++++dv+           ++e++          +          + + ++k + + ++++ + s+ + ++ q sq+ g 
  Solyc01g006650.1.1 305 NRGEKKKPLVSSDSDYDVDitddgigsvsYRDERR----------NhvhplkaipqSHQSTEKGDGHHRRRKRARSNPTEKQIQPSQLHGD 385
                         4559999999*********7666666654222222..........23344444444445555556555666666666677889******** PP

                         XXXXXXXXXXX CS
                EIN3 338 etelifadkns 348
                         e +++++d ns
  Solyc01g006650.1.1 386 EHSNTLPDINS 396
                         ******99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048735.3E-12137284No hitNo description
Gene3DG3DSA:1.10.3180.103.6E-68162290IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.35E-59165287IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0042762Biological Processregulation of sulfur metabolic process
GO:0071281Biological Processcellular response to iron ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MAVMDEIGID VSSDIEIDDI KCDIAEKDVS DEEIEPKELE RRMWKDRVKL KRLKEKQKLA  60
ARLAAEKQDN KQVTDQATRK KMSRAQDGIL KYMLKLMEVC NARGFVYGII PDKGKPVSGS  120
SDNIRAWWKE KVKFDKNGLA AIAKYEAECL ARGDGVGSQN GNPQSVLEDL QDATLGSLLS  180
SLMQHCDPPQ RKYPLEKGIS PPWWPTGDEG WWAKMGLPKG QKPPYRKPHD LKKMWKVGVL  240
TAVIKHMSPD IAKIRRLIRK SKSLQDKMTA KESSIWLAVL SREEATLQQA GSENGSSSVE  300
EPVRNRGEKK KPLVSSDSDY DVDITDDGIG SVSYRDERRN HVHPLKAIPQ SHQSTEKGDG  360
HHRRRKRARS NPTEKQIQPS QLHGDEHSNT LPDINSSKML LAGRITSNSL QGNDKSETTN  420
SVENDLEIQS ELPLQDSNLS LVPSAHVVRK EDTYIGAGPS FYPMSQNSAV VPYESEMHLE  480
NQRSIVQHQF QDTQFHGLQK ISGINDGPQI SLSHYGPPNN GLQYGPPSSI AHTELQVSEF  540
AQGSQFSNFS QPPVYHSYSS PEFGATHAEP QSHLAHNELH VTPRHSGVGP SLHGSGNDIS  600
KVNHHDGKDM FQNNHDRHID MPFASPLGSP FDLGLDTESH FDNSDYDLDF DKELMSFFAS  660
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A1e-701642959140ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00233DAPTransfer from AT1G73730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g006650.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019069265.10.0ETHYLENE INSENSITIVE 3-like 3 protein isoform X1
RefseqXP_019069267.10.0ETHYLENE INSENSITIVE 3-like 3 protein isoform X1
SwissprotO231161e-166EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLA0A3Q7E8560.0A0A3Q7E856_SOLLC; Uncharacterized protein
STRINGSolyc01g006650.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30423178
Representative plantOGRP5631682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.11e-158ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  3. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  4. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  5. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]