PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Solyc00g117450.2.1 | ||||||||
Common Name | LOC101267013, SlEOT2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | SRS | ||||||||
Protein Properties | Length: 191aa MW: 22571.7 Da PI: 7.3123 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 120.4 | 2.4e-37 | 108 | 180 | 4 | 78 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel 78 t+sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqqql++++++++++++++ kr++++ Solyc00g117450.2.1 108 ITISCQDCGNQAKKDCQHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLSSLQQQEKEDNNKS--KRQKDD 180 689****************************************************988887755444..444433 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 4.5E-34 | 109 | 178 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 7.4E-28 | 111 | 153 | IPR006510 | Zinc finger, lateral root primordium type 1 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 191 aa Download sequence Send to blast |
MAEFFSLGEG GGREATNSQE YHHHHQETTN STHNWFLYKH HDQELSTYKG FELWQQQQQQ 60 SHHNEEEQNY QILRNPIINP FGLDIGPSHD HHHHHHHETN MMMRSSTITI SCQDCGNQAK 120 KDCQHMRCRT CCKSRGFQCQ THVKSTWVPA AKRRERQQQL SSLQQQEKED NNKSKRQKDD 180 SYTENFFPLC * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269|PubMed:24142382, ECO:0000269|PubMed:24884371}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Solyc00g117450.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001316391.1 | 1e-136 | transcription factor EXPRESSION OF TERPENOIDS 2 | ||||
Swissprot | K4B6C9 | 6e-45 | EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1 | ||||
TrEMBL | A0A494G9V4 | 1e-140 | A0A494G9V4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc00g117450.2.1 | 1e-141 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA678 | 24 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75520.1 | 4e-29 | SHI-related sequence 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Solyc00g117450.2.1 |
Entrez Gene | 101245925 | 101267013 |
Publications ? help Back to Top | |||
---|---|---|---|
|