PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc00g015730.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 96aa MW: 11014 Da PI: 8.2278 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.9 | 1.7e-05 | 39 | 61 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Solyc00g015730.1.1 39 YTCSFCRREFKSAQALGGHMNVH 61 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.71E-7 | 36 | 66 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.0E-4 | 37 | 63 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0052 | 39 | 61 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.3E-6 | 39 | 62 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.157 | 39 | 66 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 41 | 61 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence Send to blast |
MEKPGGFWIP KKSNKESSWE ELAFAEDDAA GSLWPPRSYT CSFCRREFKS AQALGGHMNV 60 HRRDRARLKQ ADDQYLFPKS SSSPEYPSHK DSDNIX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 2e-14 | 34 | 61 | 2 | 29 | superman protein |
2l1o_A | 2e-14 | 34 | 61 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, axillary buds and flowers. {ECO:0000269|PubMed:12154136}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc00g015730.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_181310.1 | 7e-65 | zinc-finger protein 10 | ||||
Swissprot | O80942 | 6e-66 | ZFP10_ARATH; Zinc finger protein 10 | ||||
TrEMBL | A0A178VU74 | 1e-63 | A0A178VU74_ARATH; ZFP10 | ||||
TrEMBL | A0A494G8V7 | 1e-64 | A0A494G8V7_SOLLC; Uncharacterized protein | ||||
STRING | AT2G37740.1 | 3e-64 | (Arabidopsis thaliana) | ||||
STRING | Solyc00g015730.1.1 | 2e-65 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2110 | 24 | 53 | Representative plant | OGRP576 | 15 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 2e-68 | zinc-finger protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Solyc00g015730.1.1 |