PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G572600.1.p
Common NameLOC101753941, SETIT_034251mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 841aa    MW: 92167.3 Da    PI: 6.2994
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G572600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.2e-182785357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        k  ++t+eq+e+Le+l+  +++ps ++r++L +++    +++ +q+kvWFqNrR ++k+
  Seita.9G572600.1.p 27 KYVRYTPEQVEVLERLYIDCPKPSSSRRQQLLRECpilaNIEPKQIKVWFQNRRCRDKQ 85
                        5678****************************************************996 PP
2START156.12.9e-491653732205
                         HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS
               START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 
                         +aee+ +e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++++ e+l d++  W +++++ e+      g  g+
  Seita.9G572600.1.p 165 IAEETFTEFLSKATGTAIDWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKVIEILKDRP-SWFRDCRSLEVFTMFPAGngGT 254
                         688999****************************************************7777777777.***********999999999** PP

                         EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
               START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                         ++l +++++a+++lvp Rdf+++Ry+ ++++g++v++++S++     p+    +++ Rae+lpSg+l++p+++g+s v++v+h dlk++++
  Seita.9G572600.1.p 255 IELVYMQMYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGPNaasAQQFERAEMLPSGYLVRPCEGGGSIVHIVDHLDLKAWSV 345
                         *******************************************999999898899************************************ PP

                         HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
               START 178 hwllrslvksglaegaktwvatlqrqce 205
                         +++lr+l++s+++ ++k+++ +l+++++
  Seita.9G572600.1.p 346 PEVLRPLYESSIVVAQKMTTVALRHLRQ 373
                         *******************999998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-17885IPR009057Homeodomain-like
PROSITE profilePS5007115.2892286IPR001356Homeobox domain
SMARTSM003895.3E-152490IPR001356Homeobox domain
SuperFamilySSF466891.03E-152688IPR009057Homeodomain-like
CDDcd000861.26E-152787No hitNo description
PfamPF000466.2E-162885IPR001356Homeobox domain
CDDcd146863.77E-679118No hitNo description
PROSITE profilePS5084825.265155383IPR002913START domain
CDDcd088757.48E-73159375No hitNo description
Gene3DG3DSA:3.30.530.203.1E-21163360IPR023393START-like domain
SMARTSM002343.0E-36164374IPR002913START domain
SuperFamilySSF559612.2E-36165376No hitNo description
PfamPF018527.3E-47165373IPR002913START domain
PfamPF086705.1E-50697839IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MAAAVAMRGG SSDSGGFDKV HGMDSGKYVR YTPEQVEVLE RLYIDCPKPS SSRRQQLLRE  60
CPILANIEPK QIKVWFQNRR CRDKQRKESS RLQAVNRKLT AMNKLLMEEN ERLQKQVSQL  120
VHENAHMRQQ LQNTSLANDT SCESNVTTPP NPIRDTSNPS GLLAIAEETF TEFLSKATGT  180
AIDWVQMPGM KPGPDSVGIV AISHGCRGVA ARACGLVNLE PTKVIEILKD RPSWFRDCRS  240
LEVFTMFPAG NGGTIELVYM QMYAPTTLVP ARDFWTLRYT TTMEDGSLVV CERSLSGSGG  300
GPNAASAQQF ERAEMLPSGY LVRPCEGGGS IVHIVDHLDL KAWSVPEVLR PLYESSIVVA  360
QKMTTVALRH LRQIAQETSG EVVYALGRQP AVLRTFSQRL SRGFNDAISG FNDDGWSIMG  420
GDGIEDVVVA CNSTKKIRNN SNVGITFGAP GGIICAKASM LLQSVPPAVL VRFLREHRSE  480
WADYNIDAYL ASSLKASACS LPGLRPMRFS GGQMIMPLAH TVENEEILEV VRLEGQSLTH  540
DEALLSRDIH LLQLCTGIDE KSVGSSFQLV FAPIDEHFPD DAPLISSGFR VIPLDMKTDG  600
VPSGRTLDLA SSLDVGSATP QASGDASPDD CNLRSVLTIA FQFPYEMHLQ DSVATMARQY  660
VRSVVSAVQR VSMAISPSQS GLNAGQRMLS GFPEAGTLAR WVCQSYHYHL GVELLNQSGE  720
GGEALLKMLW HHPDAILCCS FKEKPMFTFA NKAGLDMLET SLVALQDLTL DKIFDESGRK  780
ALFSDISKLM EQGYVYLPSG VCMSGMGRHV SFDQAVAWKV LGEDSNVHCL AFCFVNWSFV  840
*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G572600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2865260.0DQ286526.1 Zea mays rolled leaf 2 (rld2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986037.10.0homeobox-leucine zipper protein HOX10
SwissprotA2XBL90.0HOX10_ORYSI; Homeobox-leucine zipper protein HOX10
TrEMBLK4A5U70.0K4A5U7_SETIT; Uncharacterized protein
STRINGSi034251m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein