PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G570100.3.p
Common NameLOC101778530, SETIT_034382mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 639aa    MW: 67530.1 Da    PI: 7.0335
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G570100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix37.85.1e-122454287
            trihelix 42 gferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                        g++rs+k+C+ek+en+ k+yk++k+g+ +r  ++ + +++f++lea
  Seita.9G570100.3.p  2 GYKRSAKKCREKFENVDKYYKRTKDGRAGR--GDGKAYRFFSELEA 45
                        9***************************97..66667******985 PP
2trihelix108.83.6e-34345430187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW+k ev+aLi++r+e+e r++++  k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpy++qlea
  Seita.9G570100.3.p 345 RWPKAEVHALIQLRTELEARYQDSGPKGPLWEDISAGMRRLGYNRSAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYYHQLEA 430
                         8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.3E-8246No hitNo description
SMARTSM007170.0026342404IPR001005SANT/Myb domain
PROSITE profilePS500907.201344402IPR017877Myb-like domain
CDDcd122031.57E-32344409No hitNo description
PfamPF138371.1E-23345431No hitNo description
Gene3DG3DSA:1.10.10.607.6E-4345401IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MGYKRSAKKC REKFENVDKY YKRTKDGRAG RGDGKAYRFF SELEALHGAS SSPAPHPPPP  60
SSLAPTPVAM APPATPLPVL QGVPGMAPAM HAEHQPTRVA AVPQPAPLMS GTTAPAAVAS  120
DAACMMTPGD VSFSSGSDGE DTEDTGDGGK RKRQGGDVGG GGSGSGKMMR FFEGLMRQVM  180
ERQEEMQQRF IEAIERREQD RMIREEAWRR QEVARLAREQ DALAQERAMA ASRDAAVVSF  240
IQRVTGQTIP MPSVAPPVFI SALTPPPLQP TPVASAAPAA APAQHQQPPS IHLSPKPGKP  300
HPQPHQTQPP LAQLQMSSKE MIVRAPPAES QETPGSGGGA PSPSRWPKAE VHALIQLRTE  360
LEARYQDSGP KGPLWEDISA GMRRLGYNRS AKRCKEKWEN INKYFKKVKE SNKKRPEDSK  420
TCPYYHQLEA LYRSKALASS AAPPPPADQQ AAGVTVLAAV PLSQTPPHAE HGGKDCSNGN  480
GNGCAAGRGG SDNNGGSSGG MQTQASNGGV AARFSVEGAG GNGVATNKQP EGIITKETAA  540
TTEPRPQPVS MNDSYVNDTV DSDSSMDDDD DEDDFDDDDE GNVGGGNSKM QYEIQFQRQQ  600
QSQSSVVRPN ASGGAGSGPG GPGPAATASG SFLTMVHH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G570100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3578231e-118AK357823.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1062I19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986012.10.0trihelix transcription factor GTL1 isoform X1
TrEMBLA0A368SX120.0A0A368SX12_SETIT; Uncharacterized protein
STRINGSi034382m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.16e-48Trihelix family protein