PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G570100.1.p
Common NameLOC101778530, SETIT_034382mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 754aa    MW: 79376.2 Da    PI: 6.5764
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G570100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.35.8e-3076160187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW++qe+laL+++r+em+ ++r+++lk+plWe+vs+k+++ g++rs+k+C+ek+en+ k+yk++k+g+ +r  ++ + +++f++lea
  Seita.9G570100.1.p  76 RWPRQETLALLKIRSEMDAAFREAALKGPLWEQVSRKLEAMGYKRSAKKCREKFENVDKYYKRTKDGRAGR--GDGKAYRFFSELEA 160
                         8********************************************************************97..66667******985 PP
2trihelix108.44.6e-34460545187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW+k ev+aLi++r+e+e r++++  k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpy++qlea
  Seita.9G570100.1.p 460 RWPKAEVHALIQLRTELEARYQDSGPKGPLWEDISAGMRRLGYNRSAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYYHQLEA 545
                         8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.7669133IPR017877Myb-like domain
SMARTSM007170.006773135IPR001005SANT/Myb domain
CDDcd122036.88E-2875140No hitNo description
PfamPF138371.0E-2075161No hitNo description
SMARTSM007170.0026457519IPR001005SANT/Myb domain
CDDcd122031.59E-32459524No hitNo description
PROSITE profilePS500907.201459517IPR017877Myb-like domain
PfamPF138371.4E-23460546No hitNo description
Gene3DG3DSA:1.10.10.609.5E-4460516IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 754 aa     Download sequence    Send to blast
MQQPGMPPFS PAAGTPVGAA ATPAAAPSPI SSRPPEGQQQ QQVDELAGGG GSFADHEGSM  60
SAGGDEGERG GPSGNRWPRQ ETLALLKIRS EMDAAFREAA LKGPLWEQVS RKLEAMGYKR  120
SAKKCREKFE NVDKYYKRTK DGRAGRGDGK AYRFFSELEA LHGASSSPAP HPPPPSSLAP  180
TPVAMAPPAT PLPVLQGVPG MAPAMHAEHQ PTRVAAVPQP APLMSGTTAP AAVASDAACM  240
MTPGDVSFSS GSDGEDTEDT GDGGKRKRQG GDVGGGGSGS GKMMRFFEGL MRQVMERQEE  300
MQQRFIEAIE RREQDRMIRE EAWRRQEVAR LAREQDALAQ ERAMAASRDA AVVSFIQRVT  360
GQTIPMPSVA PPVFISALTP PPLQPTPVAS AAPAAAPAQH QQPPSIHLSP KPGKPHPQPH  420
QTQPPLAQLQ MSSKEMIVRA PPAESQETPG SGGGAPSPSR WPKAEVHALI QLRTELEARY  480
QDSGPKGPLW EDISAGMRRL GYNRSAKRCK EKWENINKYF KKVKESNKKR PEDSKTCPYY  540
HQLEALYRSK ALASSAAPPP PADQQAAGVT VLAAVPLSQT PPHAEHGGKD CSNGNGNGCA  600
AGRGGSDNNG GSSGGMQTQA SNGGVAARFS VEGAGGNGVA TNKQPEGIIT KETAATTEPR  660
PQPVSMNDSY VNDTVDSDSS MDDDDDEDDF DDDDEGNVGG GNSKMQYEIQ FQRQQQSQSS  720
VVRPNASGGA GSGPGGPGPA ATASGSFLTM VHH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G570100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9516591e-123EU951659.1 Zea mays clone 988816 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986012.10.0trihelix transcription factor GTL1 isoform X1
TrEMBLK4A6780.0K4A678_SETIT; Uncharacterized protein
STRINGSi034382m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-47Trihelix family protein