PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G562000.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 361aa MW: 38514 Da PI: 10.5605 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.4 | 3e-14 | 127 | 178 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+ +N+ ++ Lr+l+P++ + ++ + a+++ A++Y+k+L+ Seita.9G562000.4.p 127 QRMTHIAVERNRRRLMNDHLASLRSLIPSS---YIPRGDQATVVGGAIDYVKQLE 178 79****************************...9*******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.23E-15 | 118 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.2E-14 | 125 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.78E-11 | 125 | 179 | No hit | No description |
PROSITE profile | PS50888 | 14.983 | 126 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-11 | 127 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-9 | 132 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MERMQLQGPI ASSLWTDPQA AASTSAAVAA AAQMPFLALL QGAGVMVDEG HQDGRKRNTA 60 AFACAAAADL DLLESCVTQA AAATAAAPVA SSAPSTRAER RRKRPRPRTR AAPPPEKRRK 120 PEEAETQRMT HIAVERNRRR LMNDHLASLR SLIPSSYIPR GDQATVVGGA IDYVKQLEQQ 180 LVALQAAAAA RRGAAGAVGT AATASSDGVF VSPQYASYSE ARGCCGAGVD VEAMAAVGGH 240 VRVRVAGRRW PGRLVRAVAA LEDLRLAVLH LAVTSVGHDA VVYCFNLKAI IQRLRRYLKK 300 KTAMQHDGSR KRTDCFSSRS VALREISERS AVGLVRFRWA GLEYVDGVIV YDEPPDGGRV 360 * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 99 | 109 | RRRKRPRPRTR |
2 | 101 | 107 | RKRPRPR |
3 | 101 | 119 | RKRPRPRTRAAPPPEKRRK |
4 | 102 | 106 | KRPRP |
5 | 127 | 138 | RMTHIAVERNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G562000.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985929.1 | 0.0 | transcription factor bHLH57 isoform X2 | ||||
TrEMBL | A0A368SWL7 | 0.0 | A0A368SWL7_SETIT; Uncharacterized protein | ||||
STRING | Si040271m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46810.1 | 1e-29 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G562000.4.p |