PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G562000.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 361aa    MW: 38514 Da    PI: 10.5605
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G562000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.43e-14127178155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+ +N+ ++ Lr+l+P++   + ++ + a+++  A++Y+k+L+
  Seita.9G562000.1.p 127 QRMTHIAVERNRRRLMNDHLASLRSLIPSS---YIPRGDQATVVGGAIDYVKQLE 178
                         79****************************...9*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-15118186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-14125181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.78E-11125179No hitNo description
PROSITE profilePS5088814.983126177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-11127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-9132183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MERMQLQGPI ASSLWTDPQA AASTSAAVAA AAQMPFLALL QGAGVMVDEG HQDGRKRNTA  60
AFACAAAADL DLLESCVTQA AAATAAAPVA SSAPSTRAER RRKRPRPRTR AAPPPEKRRK  120
PEEAETQRMT HIAVERNRRR LMNDHLASLR SLIPSSYIPR GDQATVVGGA IDYVKQLEQQ  180
LVALQAAAAA RRGAAGAVGT AATASSDGVF VSPQYASYSE ARGCCGAGVD VEAMAAVGGH  240
VRVRVAGRRW PGRLVRAVAA LEDLRLAVLH LAVTSVGHDA VVYCFNLKAI IQRLRRYLKK  300
KTAMQHDGSR KRTDCFSSRS VALREISERS AVGLVRFRWA GLEYVDGVIV YDEPPDGGRV  360
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199109RRRKRPRPRTR
2101107RKRPRPR
3101119RKRPRPRTRAAPPPEKRRK
4102106KRPRP
5127138RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G562000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985929.10.0transcription factor bHLH57 isoform X2
TrEMBLA0A368SWL70.0A0A368SWL7_SETIT; Uncharacterized protein
STRINGSi040271m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79573344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-29bHLH family protein