PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G560100.2.p
Common NameLOC101773109, SETIT_034720mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TALE
Protein Properties Length: 621aa    MW: 65619.8 Da    PI: 6.8347
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G560100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.26.7e-093623991954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  Seita.9G560100.2.p 362 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 399
                         664459******************************88 PP
2BELL82.26.4e-27226294472
                BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         elq+ k kL  +leeVd+rY++y+e ++ +++ Feavag  +a+ Yt+lA+++iSrhFr+L+d i+ q+
  Seita.9G560100.2.p 226 ELQRLKDKLYIMLEEVDRRYRRYCELMRSLAGGFEAVAGERAAAAYTALASRTISRHFRSLRDGIVAQL 294
                         89999*************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-43149292IPR006563POX domain
PfamPF075269.7E-43155290IPR006563POX domain
PROSITE profilePS5007112.05340403IPR001356Homeobox domain
CDDcd000863.97E-12343404No hitNo description
SMARTSM003896.6E-9343407IPR001356Homeobox domain
SuperFamilySSF466892.14E-17344410IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-28346409IPR009057Homeodomain-like
PfamPF059208.2E-18360399IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MAHDPNLGFA DYFSAAADAT AMEEGAPELY GLHADMEFLG SMRGGLAAMP AAAHGHGHSK  60
AVLDDAGPNG GSANAATMQF LSAAGHHQQQ QPSQAPLSLS LCRPDGGGVG VTLHEHLSGS  120
SRHHQQQHPA PAAWMQNDYT APTPQGPQHA GAWHLRSSKF LVPAQQLLQE FCSLPVDSAA  180
ASNKRAKAVT AKQPSSQQQQ EDGGEGSSSS ASWAPSPQIQ AMDALELQRL KDKLYIMLEE  240
VDRRYRRYCE LMRSLAGGFE AVAGERAAAA YTALASRTIS RHFRSLRDGI VAQLQAARKA  300
LGEKDMSVPG MTRGDTPRLR VLDQCIRQQK ALTQAGMMES HPWRPQRGLP ERAVTILRAW  360
LFEHFLHPYP SDVDKHILAR QTGLSRSQVS NWFINARVRL WKPMVEEMYV EEMKDGQLDD  420
GGGSGGQHSV NPNPSSSHAS EAHGGGAAGG REVADGGENG VDRKPTRAQL MHETGSLASV  480
VNIGGAGGGV SRLANFGIMD HLDFDAYGGG DQHNHQQAGG FGGVSLTLGL QQHDFHDGGG  540
VNIAFGAPPS SAHHHGGGGA GYLFAAVGGQ QMDGGVHQGH GHHVQFGAAG GIDGEAPPHA  600
GQDHYRSLGA GFHLLRDLAG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-17349406158Homeobox protein Meis1
4xrs_B4e-17349406158Homeobox protein Meis1
5bng_A4e-17349407159Homeobox protein Meis2
5bng_B4e-17349407159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G560100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9579620.0EU957962.1 Zea mays clone 1638491 BEL1-related homeotic protein 14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985907.10.0homeobox protein BEL1 homolog
RefseqXP_012698473.10.0homeobox protein BEL1 homolog
RefseqXP_012698474.10.0homeobox protein BEL1 homolog
TrEMBLK4A7640.0K4A764_SETIT; Uncharacterized protein
STRINGSi034720m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.11e-84TALE family protein