PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G548800.1.p
Common NameLOC101761762, SETIT_036470mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 342aa    MW: 36968.6 Da    PI: 4.4271
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G548800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.6e-12173215754
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Seita.9G548800.1.p 173 MAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYVKEL 215
                         79*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.351166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-16171243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9173215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-15173233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.13E-5179220No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MELDEETFLD ELMSLRREAS ASAPWQGYQP GGGVMMSDLL FYGGEAGADA TSSGGMDLSP  60
FQELAPIQPV APPQRPHEDF NFDCLSEVCN PYRSCVAVPE EAAPGQTLVA PLHDAMAEEE  120
TSGDKGLYYG GGGSPTFVFG GGAGESSEMA IIRGVGGPHH RSKLHGAPSK NLMAERRRRK  180
RLNDRLSMLR SIVPKISKMD RTSILGDTID YVKELTERIK VLEEEIGASP EDLNLLNTLK  240
DSSNSSNEMM VRNSTKFDVE NRGDGNTRIE ICCPTNPGVL LSTVSALEVL GLEIEQCVVS  300
CFSDFGMQAS CLQEDGERQV ISTEEIKQAL FRSAGYGGRC L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174181ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G548800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9647151e-175EU964715.1 Zea mays clone 281052 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985797.10.0transcription factor bHLH61
SwissprotQ9LSL12e-65BH093_ARATH; Transcription factor bHLH93
SwissprotQ9LXA98e-66BH061_ARATH; Transcription factor bHLH61
TrEMBLK4AC630.0K4AC63_SETIT; Uncharacterized protein
STRINGSi036470m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10570.14e-68bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]