PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G540000.1.p | ||||||||
Common Name | LOC101759068, SETIT_034911mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 572aa MW: 61251.1 Da PI: 8.6368 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.3 | 2.7e-05 | 460 | 485 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ +C ++F++k +L +H ++ + Seita.9G540000.1.p 460 FECNidYCQMTFKTKTELSVHKKNmC 485 89*******************99866 PP | |||||||
2 | zf-C2H2 | 11.3 | 0.0011 | 543 | 567 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ykC+ C+k ++ s+++rH r++ Seita.9G540000.1.p 543 YKCTtpGCNKIYKFVSDFTRHRRRC 567 99*********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 16 | 460 | 482 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 0.83 | 483 | 507 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.385 | 483 | 512 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.1E-4 | 484 | 507 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 485 | 507 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.16E-14 | 494 | 549 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-10 | 508 | 533 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.801 | 513 | 542 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0012 | 513 | 537 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 515 | 537 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.3E-8 | 534 | 565 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 30 | 543 | 565 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 572 aa Download sequence Send to blast |
MRIRRYAARL LSSSSTGGAT TAAPSSPPPP PAASWLHAAA DDCCAFCDLN RSGPQEGPDA 60 IKHKGHIAGW VPESDVRGDG RVRQAQHLTS PEVKKCKTDH GRNVNKTSVG LRAPRGFSGV 120 SEAGAEPAVK PGPLVVNDAA IGQEVKCKFS LMSDAAKPEV TGGDSLVNGS TTELDVLKDA 180 PFANEAVHDP EVTDKVSTET KAATVTSIAP EVAGMPSRKA VTDPGVTVTM LRTGSLSTEG 240 ADGPEVTGAA SIMHETTKLE SAGEDYIASK PAAEPEDSSR ASSNVDATAA LDKSQLHSCN 300 PNIGNVQLGN AGETVASAVQ PSGCDAAKVG SSVNSTSNGP VGAKGPTVEG GMPNDRSVTP 360 RVSYVFDIVA RSIGTSGRTD IICYARRRGK RKLELLKVKM ENIELEDGVV CEEGTLERTG 420 RCESVLSNAG SVDVKLADIK KELMDDSAAS KVKKTKKNRF ECNIDYCQMT FKTKTELSVH 480 KKNMCTVKSC SRQFRSHRYL RRHQSVHNDD MPYKCPWDGC GMAFKWSWDR TEHFKVHAGV 540 KPYKCTTPGC NKIYKFVSDF TRHRRRCKPQ R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6a57_A | 2e-40 | 460 | 566 | 23 | 129 | Lysine-specific demethylase REF6 |
6a58_A | 2e-40 | 460 | 566 | 23 | 129 | Lysine-specific demethylase REF6 |
6a59_A | 2e-40 | 460 | 566 | 23 | 129 | Lysine-specific demethylase REF6 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 385 | 391 | RRRGKRK |
2 | 385 | 392 | RRRGKRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G540000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985697.1 | 0.0 | zinc finger protein GLI1 isoform X2 | ||||
TrEMBL | K4A7Q5 | 0.0 | K4A7Q5_SETIT; Uncharacterized protein | ||||
STRING | Si034911m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11491 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48430.1 | 6e-41 | relative of early flowering 6 |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G540000.1.p |
Entrez Gene | 101759068 |