PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G516500.1.p
Common NameSETIT_036118mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 308aa    MW: 32952 Da    PI: 4.3756
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G516500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-1893142255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +ykGVr+++ +g+W+AeIrdp+    +  r++lg+f +ae Aa a++aa++ ++g
  Seita.9G516500.1.p  93 QYKGVRRRP-WGKWAAEIRDPV----KgVRVWLGTFPSAEAAALAYDAAARDIRG 142
                         69*******.**********75....44***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.45E-1792150No hitNo description
SMARTSM003801.2E-3493156IPR001471AP2/ERF domain
PROSITE profilePS5103224.2193150IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2293150IPR016177DNA-binding domain
PfamPF008473.4E-1293142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-3193151IPR001471AP2/ERF domain
PRINTSPR003679.6E-1094105IPR001471AP2/ERF domain
PRINTSPR003679.6E-10116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MCGGAILAEL IPSTPAGRVT PGHLWPAASK GKQQRRADDY EAAFREFDEE EEEVESKPAF  60
AFSASFAATR KLRRQQRQEL AAPAPSRRRK AAQYKGVRRR PWGKWAAEIR DPVKGVRVWL  120
GTFPSAEAAA LAYDAAARDI RGARAKLNFP SPADAVQNSG KRGRAAEVVD LVADEEDEAS  180
ESSDSGALPD FSWQGVSVYD EEAPAAHPAL EAADQSSGGA SKRQRTEPES ADDEASPRAS  240
DSESDALFDA FIFGDQFAYF NGGAYESLDS LFSADAVQGS SAAVAADEGM GLWSFDDGCL  300
VEDNLSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2190150263ATERF1
3gcc_A7e-2190150263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18799RRKAAQYKGVRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G516500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0685517e-75BT068551.1 Zea mays full-length cDNA clone ZM_BFb0310P02 mRNA, complete cds.
GenBankEU9557157e-75EU955715.1 Zea mays clone 1543173 ethylene-responsive element binding protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698500.10.0ethylene-responsive transcription factor ERF073
TrEMBLA0A368SV100.0A0A368SV10_SETIT; Uncharacterized protein
TrEMBLK4AB610.0K4AB61_SETIT; Uncharacterized protein
STRINGSi036118m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.12e-17ERF family protein