PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G515300.1.p
Common NameLOC101769075, SETIT_037266mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 238aa    MW: 26437.3 Da    PI: 9.7126
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G515300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.49.6e-17137227199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f+k++++s+v +  +l lp +f+++++ k  ++  +tl de+ ++++ ++    ++++  l++GW +F+ ++gL++gD  vF+l++ ++f 
  Seita.9G515300.1.p 137 FVKAMLHSHVVRGFWLGLPSHFCDTYMPK--QDSIVTLVDEKDEEFDTNY--LAYKKG--LSGGWAGFAISHGLQDGDAAVFQLIKPTTF- 220
                         89************************744..5669***************..555555..9***********************986777. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                          +v+++r+
  Seita.9G515300.1.p 221 -KVHIIRA 227
                         .9999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-19128227IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-23130227IPR015300DNA-binding pseudobarrel domain
CDDcd100171.31E-25135226No hitNo description
PfamPF023625.2E-15137227IPR003340B3 DNA binding domain
SMARTSM010196.0E-18137228IPR003340B3 DNA binding domain
PROSITE profilePS5086311.829137228IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MAEVAKQGMS PYEAARERTV LENKRKMEAL NLRHLSAAIK EAPKTPSPMK QKRRRIVEHA  60
VVVPSPPRRS RRVANLPAVK YSEIAPHTAD RMTRSPRKPA DLIYLASRGS ISMKARMEAA  120
TKAEELESQL DPEIPSFVKA MLHSHVVRGF WLGLPSHFCD TYMPKQDSIV TLVDEKDEEF  180
DTNYLAYKKG LSGGWAGFAI SHGLQDGDAA VFQLIKPTTF KVHIIRAASG DGSEEDE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15155KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G515300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0873000.0BT087300.1 Zea mays full-length cDNA clone ZM_BFb0032O11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985456.11e-176B3 domain-containing protein Os03g0184500
SwissprotQ10QS91e-138Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBLK4AEF91e-175K4AEF9_SETIT; Uncharacterized protein
STRINGSi037266m1e-176(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.16e-51B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]