PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G513900.3.p
Common NameLOC101761485, SETIT_037358mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 25384.8 Da    PI: 8.6902
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G513900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.91.7e-251261251
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        ri+n   rqvtfskRr g++KKAeELS+LCdaev +++fs tgkl+ ++s
  Seita.9G513900.3.p 12 RIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFNFAS 61
                        89*********************************************986 PP
2K-box42.82.3e-15881741399
               K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                         ++   +    +L++e+ +   ++R++ Ge+L++Ls+++Lq+Le+ Le++l ++ + K++ +l++i+ l +k  +l een +L+++++
  Seita.9G513900.3.p  88 QSHVNDSTCVRLREELAEASLKLRQMRGEELQRLSVQQLQELEKTLESGLGSVLKIKSQKILDEINGLERKRMQLIEENSRLKEQVA 174
                         22333445669999999999***************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.7E-33362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.179363IPR002100Transcription factor, MADS-box
PROSITE patternPS003500559IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-29587IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-24525IPR002100Transcription factor, MADS-box
CDDcd002651.29E-36576No hitNo description
PfamPF003193.2E-241259IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-242540IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-244061IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.87689179IPR002487Transcription factor, K-box
PfamPF014861.4E-1393173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MAGKRERIAI RRIDNLAARQ VTFSKRRRGL FKKAEELSIL CDAEVGLVVF SATGKLFNFA  60
SSSMKQIIDR YDSHSKTLQK SEASSKLQSH VNDSTCVRLR EELAEASLKL RQMRGEELQR  120
LSVQQLQELE KTLESGLGSV LKIKSQKILD EINGLERKRM QLIEENSRLK EQVARMEMQL  180
GADSEVVYEE GQSSESVTNT SYPPADTDDG GSDTSLRLGL PLFSSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-18575373MEF2C
5f28_B3e-18575373MEF2C
5f28_C3e-18575373MEF2C
5f28_D3e-18575373MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G513900.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0360480.0BT036048.1 Zea mays full-length cDNA clone ZM_BFb0093D17 mRNA, complete cds.
GenBankBT0873240.0BT087324.1 Zea mays full-length cDNA clone ZM_BFb0039N23 mRNA, complete cds.
GenBankBT0878520.0BT087852.1 Zea mays full-length cDNA clone ZM_BFb0227O08 mRNA, complete cds.
GenBankEU9561480.0EU956148.1 Zea mays clone 1558111 MADS-box transcription factor 47 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698351.11e-162MADS-box transcription factor 47 isoform X2
SwissprotQ5K4R01e-118MAD47_ORYSJ; MADS-box transcription factor 47
TrEMBLK4AER71e-161K4AER7_SETIT; Uncharacterized protein
STRINGSi037358m1e-160(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-77MIKC_MADS family protein
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]