PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G511500.1.p | ||||||||
Common Name | LOC101785512, SETIT_036724mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 314aa MW: 34357.8 Da PI: 4.5133 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.2 | 7.9e-20 | 69 | 121 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ eq+++Le++Fe +++++ ++++++A+ lgL+ rqV vWFqNrRa++k Seita.9G511500.1.p 69 KRRLAMEQVRALERCFETDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWK 121 557899**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 127.5 | 5.6e-41 | 67 | 159 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqv++LE++Fe+++kL+p+rK+++ar+LglqprqvavWFqnrRAR+ktk lE+d++aL++++dal+++ ++L++++++L++e+ Seita.9G511500.1.p 67 EKKRRLAMEQVRALERCFETDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKTLERDFAALRARHDALRADCDALRRDKDALAAEI 157 69**************************************************************************************999 PP HD-ZIP_I/II 92 ke 93 +e Seita.9G511500.1.p 158 RE 159 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.13E-18 | 65 | 123 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.2E-19 | 66 | 127 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.406 | 67 | 123 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.6E-17 | 68 | 121 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.82E-17 | 68 | 123 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-20 | 75 | 122 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.8E-5 | 94 | 103 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 98 | 121 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.8E-5 | 103 | 119 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.1E-13 | 123 | 164 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MKRQSKRPAS SNESTEAGEK LAFAEDEAQA LTARNMEHDD AELDDVDDDE DELAGGRAAR 60 PACGLGEKKR RLAMEQVRAL ERCFETDNKL DPDRKARIAR DLGLQPRQVA VWFQNRRARW 120 KTKTLERDFA ALRARHDALR ADCDALRRDK DALAAEIREL RQKLSSRPET AVKLEEAVAN 180 EAAEERQATV GAAVCKDGSS DSDSSVVFND VEASPYSGAA FEQPGLLGFG PPFLDTSAAT 240 TGCSPLPMFE TKWQQGPTYP YDSYKAGGGY GFTEEWLASS DVIGSDGAVS FFSEEHASSL 300 NFGWCASGTE AWE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G511500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX469925 | 0.0 | JX469925.1 Zea mays subsp. mays clone UT3181 HB-type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985408.1 | 0.0 | homeobox-leucine zipper protein HOX13 | ||||
Swissprot | Q10QP3 | 1e-111 | HOX13_ORYSJ; Homeobox-leucine zipper protein HOX13 | ||||
TrEMBL | K4ACW7 | 0.0 | K4ACW7_SETIT; Uncharacterized protein | ||||
STRING | Si036724m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4283 | 31 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22430.1 | 2e-27 | homeobox protein 6 |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G511500.1.p |
Entrez Gene | 101785512 |
Publications ? help Back to Top | |||
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