PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G510100.1.p
Common NameSETIT_034076mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family CAMTA
Protein Properties Length: 1035aa    MW: 115162 Da    PI: 5.3218
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G510100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1178.11.1e-55201363118
                CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                         ke ++rwl++ ei++iL+n++++++t e+++rp+sgsl+L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+++vl+cyYah+een+
  Seita.9G510100.1.p  20 KEaQNRWLRPAEICEILKNYRNFRITPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKSGSIDVLHCYYAHGEENE 110
                         5559*************************************************************************************** PP

                CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                         +fqrr+yw+Lee++ +ivlvhylevk
  Seita.9G510100.1.p 111 NFQRRSYWMLEEDFMHIVLVHYLEVK 136
                         ***********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143783.17215141IPR005559CG-1 DNA-binding domain
SMARTSM010761.1E-7718136IPR005559CG-1 DNA-binding domain
PfamPF038591.3E-4921135IPR005559CG-1 DNA-binding domain
CDDcd001022.60E-5445532No hitNo description
Gene3DG3DSA:2.60.40.104.8E-8445530IPR013783Immunoglobulin-like fold
SuperFamilySSF812969.33E-19446531IPR014756Immunoglobulin E-set
PfamPF018335.6E-9448525IPR002909IPT domain
CDDcd002041.63E-12626738No hitNo description
SuperFamilySSF484034.97E-16637741IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.3E-16640744IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.131646750IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.576646678IPR002110Ankyrin repeat
PROSITE profilePS500888.736679711IPR002110Ankyrin repeat
SMARTSM002480.013679708IPR002110Ankyrin repeat
SMARTSM002483500718747IPR002110Ankyrin repeat
SuperFamilySSF525401.91E-8851903IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.07852874IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.114853882IPR000048IQ motif, EF-hand binding site
PfamPF006120.0029854873IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0019875897IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.542876900IPR000048IQ motif, EF-hand binding site
PfamPF006121.6E-4878897IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1035 aa     Download sequence    Send to blast
MAEARRYAIA PQLDIEQILK EAQNRWLRPA EICEILKNYR NFRITPEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKSGSIDVLH CYYAHGEENE NFQRRSYWML  120
EEDFMHIVLV HYLEVKGGKS SSRIRGHDDM LQAARTDSPL SQLPSQTTEG ESSLSGQASE  180
YEETESDIYS GGAGYHPFSW MQQHENGGGP VMGASILSSY IPAPSVGNHQ GFLATTTTTD  240
FYSHGQDALP VALNEPGFGI AFDEADNQLD PSSLNGLVKP DQGVHRMAPP QIADPSKQFP  300
FTEGSGIESF TFDEVYSNGL SIKDADTVGT DEESLWQLPG AISSFPTEDS SQQNGRSLEE  360
AINHPLLKTQ SSSLSDILKD SFKKNDSFTR WMSKELGEVD DSPIKSSSGV YWNSEDTDNI  420
IEASSRDQLD QFTVDPVVAQ DQLFSIFDFS PSWAYAGSKT RVLITGRFLN SDEVQRCKWS  480
CMFGEVEVPA EISADGTLRC YSPSHKPGRV PFYVTCSNRL ACSEIREFEF RPSNSQHIDG  540
PTPHDIANKT YLQMRLDDLL SLGQDEYQAT VSNPTKDMID LSKKISSLMT DNDSWSELLK  600
LAGDNELATD DKQDQFFENR VKEKLHIWLV HKAGDGGKGP SVLDEEGQGV LHLAAALGYD  660
WAIRPTISAG VSINFRDAHG WTALHWAAFC GRERTVVALI ALGAAPGALT DPTPDFPTGS  720
TPADLASANG YKGISGFLAE SSLTSHLQTL NLKEAMWSNA PEISGLPGIG DVTERKLSPL  780
AGEGLLAGSM GDSLGAVRNA TQAAARIYQV FRMQSFQRKQ VVQYEDDNGA ISDDCALSLL  840
SVKPSKPGQL DPLHAAATRI QNKYRGWKGR KEFLLIRQRI IKIQAHVRGH QVRKHYRKII  900
WSVGIVEKVI LRWRRRGAGL RGFRSTEGAA EGTSSSGSDL IQNKPAEDDY DFLQQGRKQT  960
EERLQKALAR VKSMVQYPDA RDQYQRILNV VTKMQESQAM QEKMLESSTD MDEGLAMSDF  1020
EELWGDDMPM PGYI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00042PBMTransfer from AT2G22300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G510100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985393.10.0calmodulin-binding transcription activator 3 isoform X2
TrEMBLA0A368SUT70.0A0A368SUT7_SETIT; Uncharacterized protein
STRINGSi034076m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1