PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G499300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 313aa MW: 33971.8 Da PI: 5.4273 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.4 | 8.1e-11 | 237 | 277 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Seita.9G499300.1.p 237 RKRRERINERLKILQNLIPNG-----TKVDISTMLEEAVQYVKFLQ 277 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.154 | 227 | 276 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.84E-14 | 229 | 290 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-12 | 232 | 286 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-11 | 233 | 282 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.38E-12 | 236 | 281 | No hit | No description |
Pfam | PF00010 | 3.6E-8 | 237 | 277 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MESSEASWHS FDPSVAVEDS EAMAQLLGVQ YFGNEHKQPA PTTAMYWPGC QEADQYYGSA 60 APYYMHQPST GAGCYDGHAG YYGSGTVTMT GDFFVPDEQV ADPSFMLDLN LDFEDQDGGD 120 VPAACKRKLL QDHKDESATC TVPKKKPRST AMPVQKKGKN AQSKKAQKKG ACSRGNQEES 180 NGDGNVQCSG NYLSDDDSLE MTACSNVSSA SRKSSSGGGK ARAGRGAATD PQSLYARKRR 240 ERINERLKIL QNLIPNGTKV DISTMLEEAV QYVKFLQLQI KLLSSDDMWM FAPIAYNGVN 300 VGLDLKISPP QQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 142 | 148 | PKKKPRS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G499300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014661366.2 | 0.0 | transcription factor bHLH54 | ||||
TrEMBL | A0A368SUB2 | 0.0 | A0A368SUB2_SETIT; Uncharacterized protein | ||||
STRING | Si039277m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11680 | 28 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 4e-47 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G499300.1.p |