PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G456600.1.p
Common NameLOC101780280, SETIT_035672mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 450aa    MW: 47206.6 Da    PI: 8.7016
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G456600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.2e-05201224123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         ++C+ Cg++  r+ +L+ H+ + H
  Seita.9G456600.1.p 201 FPCKVCGEVLARPQLLELHQAMrH 224
                         89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.621201229IPR007087Zinc finger, C2H2
PROSITE patternPS000280203224IPR007087Zinc finger, C2H2
SuperFamilySSF563993.45E-11227278No hitNo description
Gene3DG3DSA:3.90.228.106.9E-7255448IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563993.45E-11306448No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MAGGSGSSLL RGFLSLFFLL FIHIGHAGCC FSSGSAARAR EEDEAEDADA DGKVGGAGGG  60
SNKRRKISPL IFSPAASSSA ATNDSVRARR RHVSSVAASL RLYLHRIFSS SGARDATVAG  120
REEEEAVTTT VSSPLARSLP PQPSASVVLS TPSSPCASSS PFMSPLSVRS LSATPVPSSP  180
QKLLQASRQS SRSFAARGDV FPCKVCGEVL ARPQLLELHQ AMRHSLSELT DLDSSTNIIR  240
MIFLAGWKPG VGAGAGEAPI VVRRVLRIHH NPRALARFEE YRDLVRARAA RRCAGEGGAA  300
AAAVEERCVA DGNERLRFHC STMLCSLGGG GACGSPYCCV CSTLRHGFAG KQADVDGIAT  360
YASAWAAHAS LPDDVEREFA FLQVRRAMLV CRVVAGRVGR GADDDKVAYD SMVPVRGVGG  420
GRATGGDDVE LLVFNPRAVL PCFVILYSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G456600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0664350.0BT066435.1 Zea mays full-length cDNA clone ZM_BFc0163N15 mRNA, complete cds.
GenBankBT0845420.0BT084542.1 Zea mays full-length cDNA clone ZM_BFb0129H01 mRNA, complete cds.
GenBankEU9546110.0EU954611.1 Zea mays clone 1473866 nucleic acid binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984691.10.0uncharacterized protein LOC101780280
TrEMBLK4A9W60.0K4A9W6_SETIT; Uncharacterized protein
STRINGSi035672m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105173037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-32C2H2 family protein