PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G413200.2.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 240aa    MW: 24949.7 Da    PI: 5.5426
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G413200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.58.4e-263393259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                        +Dg+ WrKYGqKe+++s +prsYYrCt++   gC++k++v+ ++ dp+ +++tY g+H+++
  Seita.9G413200.2.p 33 EDGHVWRKYGQKEIQNSSYPRSYYRCTHRsdqGCNAKRQVQVCEADPSKFVVTYYGDHTCR 93
                        8***************************99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-272795IPR003657WRKY domain
PROSITE profilePS5081122.9862795IPR003657WRKY domain
SuperFamilySSF1182904.71E-253095IPR003657WRKY domain
SMARTSM007741.3E-343294IPR003657WRKY domain
PfamPF031061.2E-243393IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MHVMLLILLF YFCLCFTSRS QRPSDKKITA TLEDGHVWRK YGQKEIQNSS YPRSYYRCTH  60
RSDQGCNAKR QVQVCEADPS KFVVTYYGDH TCRDPSTIPL VVPAAGAAPD CANNLINFGT  120
SGTNNNAAAS TTGASSSQYL AMGGSAADQL STSWCASDDV FSSSAGSFMQ VDELIGAVVG  180
SAGVTSTATV GSSALDRGGH GGMGMAGGGG GTASFPPSPN GLGSFVVGSY DDDLFPMDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-282893469OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G413200.2.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984467.11e-162probable WRKY transcription factor 70 isoform X1
TrEMBLA0A368SR761e-176A0A368SR76_SETIT; Uncharacterized protein
STRINGSi036565m1e-162(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-24WRKY DNA-binding protein 70